View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_12 (Length: 370)
Name: NF18285_low_12
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 28858169 - 28858499
Alignment:
| Q |
18 |
ctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaatttaggaacctacgcaaaagataaggtt |
117 |
Q |
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| T |
28858169 |
ctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaatttaggaacctacgcaaaagataaggtt |
28858268 |
T |
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| Q |
118 |
aagtcaagggtaaatactaagaaacagtcccaaataagtagttcgattggtgatctaagggactcaaaaagagtttttgcaggaggtctatggtttgacc |
217 |
Q |
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| T |
28858269 |
aagtcaagggtaaatactaagaaacagtcccaaataagtagttcgattggtgatctaagggactcaaaaagagtttttgcaggaggtctatggtttgatc |
28858368 |
T |
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| Q |
218 |
cctaacaactaacttagtcactttgctcgnnnnnnncggaaattggaaccattttatgcaaagtagatttgacacaacaagaaaccacattttggacaca |
317 |
Q |
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| T |
28858369 |
cctaacaactaacttagtcactttgctcgaaaaaaacagaaattggaaccattttatgcaaagtagatttgacacaacaagaaaccacattttggacaca |
28858468 |
T |
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| Q |
318 |
ctaaacaacattaatgtaaatcaagacatca |
348 |
Q |
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| T |
28858469 |
ctaaacaacattaatgtaaatcaagacatca |
28858499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 28842762 - 28842851
Alignment:
| Q |
18 |
ctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaatttaggaacctacgcaaa |
107 |
Q |
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| T |
28842762 |
ctttcaacagtctatcttgctttcttcttttatgccatacttgtttattatgagatcattttatccatacaattgagggacctacacaaa |
28842851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 28842968 - 28843042
Alignment:
| Q |
263 |
gaaccattttatgcaaagtagatttgacacaacaagaaaccacattttggacacactaaacaacattaatgtaaa |
337 |
Q |
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| T |
28842968 |
gaaccattttatgtaaagtaaatccgatacaacaagaaaccacattatcgacacaccaaagaacattaatgtaaa |
28843042 |
T |
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