View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18285_low_13 (Length: 367)
Name: NF18285_low_13
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_13 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 19394471 - 19394807
Alignment:
| Q |
13 |
cagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394471 |
cagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgc |
19394570 |
T |
|
| Q |
113 |
agtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394571 |
agtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgtt |
19394670 |
T |
|
| Q |
213 |
attttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttcaagttttatccctcaaactataaagta |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19394671 |
attttgacggtaaagttaaatagctttcgcagaaattgaggtcctgccaattaaggttagtgaaacctacttcaagttttatcactcaaactataaagta |
19394770 |
T |
|
| Q |
313 |
tttgtttcattatgtaattctaatcaaaacttacatc |
349 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19394771 |
tttgtttcattatgtaattctaataaaaacttacatc |
19394807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 19465678 - 19466010
Alignment:
| Q |
17 |
agaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagta |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||| || || ||||||||||||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
19465678 |
agaagaaaatcctaaaactgcactgccatctacagagaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagca |
19465777 |
T |
|
| Q |
117 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| || |
|
|
| T |
19465778 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactt |
19465877 |
T |
|
| Q |
217 |
tgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttcaagttttatccctcaaactataaagtatttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
19465878 |
tgacggtaaagttaaatagctttcgcagaaattgagctcctaccagttaaggttagtgaaacctacttcaagttttatcagtcaaactatagaatatttc |
19465977 |
T |
|
| Q |
317 |
tttcattatgtaattctaatcaaaacttacatc |
349 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
19465978 |
tttcattatgcaattctaatcaaaacttacatc |
19466010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 19382219 - 19382551
Alignment:
| Q |
17 |
agaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagta |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| || ||||||||||| |||||||||||||||| |||| |
|
|
| T |
19382219 |
agaagaaaatcctaaaactgcactgccatctacagagaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagta |
19382318 |
T |
|
| Q |
117 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattt |
216 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19382319 |
ggtttttgggggatttgtggttctttatttcttattaggaaatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattt |
19382418 |
T |
|
| Q |
217 |
tgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttcaagttttatccctcaaactataaagtatttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
19382419 |
tgacggtaaagttaaatagctttcgcagaaattgagctgctgccagttaaggttagtgaaacctacttcaagttttattaatcaaactatagagtaattg |
19382518 |
T |
|
| Q |
317 |
tttcattatgtaattctaatcaaaacttacatc |
349 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |
|
|
| T |
19382519 |
tttcattacgcaattctaatcaaaacttacatc |
19382551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 18872558 - 18872231
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||| ||||||| ||||||| || ||||||||||||||| |
|
|
| T |
18872558 |
cacaaaagaagaaaatcctaaaactgcaaagccatctacaaagaatgaagattatgcttctataagagaatcaatgtatcttggcatgggagttggattt |
18872459 |
T |
|
| Q |
111 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
18872458 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatacttttggtttatatatggagtaggtgacaagctctatg |
18872359 |
T |
|
| Q |
211 |
ttattttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttcaagttttatccctcaaactataaag |
310 |
Q |
| |
|
||| ||||| | ||||||||||||||||||||||| |||||| || ||||| |||||||||||||| ||||||||||| |||||| ||| || |
|
|
| T |
18872358 |
ttactttgatgataaagttaaatagctttcgcagatattgagctcctgcca-------ttagtgaaacctacgtcaagttttattaatcaaaccatagag |
18872266 |
T |
|
| Q |
311 |
tatttgtttcattatgtaattctaatcaaaacttacatc |
349 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18872265 |
tatttgtttcat----taattctaatcaaaacttacatc |
18872231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 18166476 - 18166815
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| ||| |||||| ||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
18166476 |
cacaaaagaaaaaaattctaaaactgcaacgccgtctacaaagaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggattt |
18166575 |
T |
|
| Q |
111 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||| || |||| |||||||||||||||| |
|
|
| T |
18166576 |
gcagtaggtttctgggggatttgtggttctttgtttcttattagaaaatggagacatgcatactttcggtttattgatagagttggtgacaagctctatg |
18166675 |
T |
|
| Q |
211 |
ttattttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttc-aagttttatccctcaaactataaa |
309 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| ||||||||| ||||| ||| | |
|
|
| T |
18166676 |
ttactttgaacgtaaagttaaatagctttctcagaaactgagttcatgctggttaaggttagtgaaacctacttcaaagttttattaatcaaaatattga |
18166775 |
T |
|
| Q |
310 |
gtatttgtttcattatgtaattctaatcaaaacttacatc |
349 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18166776 |
gtatttgtttccttatgtaattctattcaaaacttacatc |
18166815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 17726214 - 17725949
Alignment:
| Q |
14 |
agaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgca |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17726214 |
agaagaagaaaatcctaaaaattcaaagttgtctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgca |
17726115 |
T |
|
| Q |
114 |
gtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgtta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
17726114 |
gtaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgtta |
17726015 |
T |
|
| Q |
214 |
ttttgacggtaaagttaaatagc-tttcgcagaaattgaggtcttgccaattaaggttagtgaaac |
278 |
Q |
| |
|
||| | ||||||||||||||| ||| |||||||| ||| ||||| | |||||||||||||||| |
|
|
| T |
17726014 |
ctttaattgtaaagttaaatagctttttgcagaaatagagttcttgttagttaaggttagtgaaac |
17725949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 19027443 - 19027178
Alignment:
| Q |
14 |
agaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgca |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19027443 |
agaagaagaaaatcctaaaaattcaaagttgtctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgca |
19027344 |
T |
|
| Q |
114 |
gtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgtta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
19027343 |
gtaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgtta |
19027244 |
T |
|
| Q |
214 |
ttttgacggtaaagttaaatagc-tttcgcagaaattgaggtcttgccaattaaggttagtgaaac |
278 |
Q |
| |
|
||| | ||||||||||||||| ||| |||||||| ||| ||||| | |||||||||||||||| |
|
|
| T |
19027243 |
ctttaattgtaaagttaaatagctttttgcagaaatagagttcttgttagttaaggttagtgaaac |
19027178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 19456621 - 19456856
Alignment:
| Q |
15 |
gaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcag |
114 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||| ||||||||| |||||||||| ||||||| ||| ||| || |||||||||||||||||| |
|
|
| T |
19456621 |
gaagaagaaaatcctaagactgcaac-ccatccacagagattgaagatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcag |
19456719 |
T |
|
| Q |
115 |
taggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||| | ||||||| | |
|
|
| T |
19456720 |
taggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaac |
19456819 |
T |
|
| Q |
215 |
tttgacggtaaagttaaatagctttcgcagaaattga |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19456820 |
tttgatggtaaagttaaatagctttcgcagaaattga |
19456856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 18017348 - 18017583
Alignment:
| Q |
17 |
agaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagta |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
18017348 |
agaagaaaatcctaaaactgcaatgccatctacagagaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagca |
18017447 |
T |
|
| Q |
117 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||| ||| ||| || ||||| | || |
|
|
| T |
18017448 |
ggtttctgggggatttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactt |
18017547 |
T |
|
| Q |
217 |
tgacggtaaagttaaatagctttcgcagaaattgag |
252 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
18017548 |
tgatggtaaagttaaatagctttcgtagaagttgag |
18017583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 17943279 - 17943549
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||| || || ||||| ||||||||||||| |
|
|
| T |
17943279 |
aagaagaaaatcctaaaactgcaaagccgtccacagagaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagc |
17943378 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| || |||| || ||||| |||||||||| | |
|
|
| T |
17943379 |
aggtttttgggggatttgtggttctttgttttttattagaaaatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttact |
17943478 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttca |
286 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| | || | ||||||||||| ||||||| |||| |
|
|
| T |
17943479 |
ttgatcgtaaagttaaatagctttcgcagaaactgagctgctgttagttaaggttagttaaacctatttca |
17943549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 19352717 - 19352947
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19352717 |
aagaagaaaatcctaagactgcaacgccatcaacagagaatgaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagc |
19352816 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||| ||| ||| ||||| | | |
|
|
| T |
19352817 |
aggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacaggctttatgtaact |
19352916 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaa |
246 |
Q |
| |
|
|| | ||||||||||||||||||||| |||| |
|
|
| T |
19352917 |
ttaatggtaaagttaaatagctttcgtagaa |
19352947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 19335337 - 19335669
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19335337 |
aagaagaaaatcctaaaactgcaatgccatcaacagataatgaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagc |
19335436 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || | ||| |||| ||||||||| ||||||||| | |
|
|
| T |
19335437 |
aggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttact |
19335536 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgc--caattaaggttagtgaaacctacttca-agttttatccctcaaactataaagta |
312 |
Q |
| |
|
|||| |||||||| || | ||| |||||||||| || ||| | |||||||||||| ||||||||||| |||||||| || |||||| |||| |
|
|
| T |
19335537 |
ttgatcgtaaagttgaacatgtttaaaagaaattgagctcctgctatagttaaggttagtggaacctacttcatagttttattaatctgactatagagta |
19335636 |
T |
|
| Q |
313 |
tttgtttcattatgtaattctaatcaaaactta |
345 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||| |
|
|
| T |
19335637 |
tttgttttattttgtaattctatgcaaaactta |
19335669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 19355040 - 19355372
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19355040 |
aagaagaaaatcctaaaactgcaatgccatctacaaaaaatgaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagt |
19355139 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||| || | || |||| |||||||| ||||||||| | |
|
|
| T |
19355140 |
aggtttctgggggatttgccgttctttgtttctaattagaaaatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttact |
19355239 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgcca--attaaggttagtgaaacctacttca-agttttatccctcaaactataaagta |
312 |
Q |
| |
|
|||| ||||||||||| | ||| |||||||||| || ||| | |||||||||||| ||||||||||| |||||||| || ||||||||||| |
|
|
| T |
19355240 |
ttgatcgtaaagttaaacgggtttaaaagaaattgagctcctgctattgttaaggttagtggaacctacttcatagttttattgatctgactataaagta |
19355339 |
T |
|
| Q |
313 |
tttgtttcattatgtaattctaatcaaaactta |
345 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||| |
|
|
| T |
19355340 |
tttgttttattttgtaattctatgcaaaactta |
19355372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 19426015 - 19426336
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19426015 |
aagaagaaaatcctaaaactgcaacaccatctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagt |
19426114 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||| || | || |||| |||| ||| ||||||||| | |
|
|
| T |
19426115 |
aggtttctgggggatttgtggttctttgttccttattagaaaatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttact |
19426214 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgc--caattaaggttagtgaaacctacttca-agttttatccctcaaactataaagta |
312 |
Q |
| |
|
|||| ||||||||||| | ||| |||||||||| | ||| | |||||||||||| ||||||||||| |||||||| || ||||||||||| |
|
|
| T |
19426215 |
ttgatcgtaaagttaaaccgatttaaaagaaattgagcacctgctatagttaaggttagtggaacctacttcatagttttattgatctgactataaagta |
19426314 |
T |
|
| Q |
313 |
tttgtttcattatgtaattcta |
334 |
Q |
| |
|
|| |||| ||| |||||||||| |
|
|
| T |
19426315 |
ttcgttttattttgtaattcta |
19426336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 14895070 - 14894795
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| | |||| ||| |||||| || |||||||||| ||||||| ||||||| || |||||| |||||||| |
|
|
| T |
14895070 |
cacagaagaagaaaatcctaacactgaaaagccttttacacagattgaagacgaggactctataagagaatcaatgtatcttggcatgggaattggattt |
14894971 |
T |
|
| Q |
111 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatg |
210 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
14894970 |
gcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggcatgcatactttcggtttattgatggagtaggtgacaagctctatg |
14894871 |
T |
|
| Q |
211 |
ttattttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttca |
286 |
Q |
| |
|
||| ||||| ||||||||| | |||| | | |||||||| || || | |||||||||||| ||||||||||| |
|
|
| T |
14894870 |
ttactttgatcccaaagttaaacaactttggaaaaaattgagctccggctagttaaggttagtgtaacctacttca |
14894795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 17951181 - 17951384
Alignment:
| Q |
49 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
148 |
Q |
| |
|
|||||||||| ||||| || ||| |||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17951181 |
cagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
17951280 |
T |
|
| Q |
149 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
248 |
Q |
| |
|
|||| | |||||||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||| | ||||| ||||||||||||||||||| |||||| | |
|
|
| T |
17951281 |
tattcgaaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttttgcagaagt |
17951380 |
T |
|
| Q |
249 |
tgag |
252 |
Q |
| |
|
|||| |
|
|
| T |
17951381 |
tgag |
17951384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 72 - 345
Target Start/End: Original strand, 19377000 - 19377274
Alignment:
| Q |
72 |
ataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcat |
171 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19377000 |
ataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggcatgcat |
19377099 |
T |
|
| Q |
172 |
gctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggtta |
271 |
Q |
| |
|
||||| | |||| || ||||||||||||| |||||||||| ||||| ||||||||||| || |||| ||||||| || || ||||| ||||||| | |
|
|
| T |
19377100 |
actttcagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaacaggtttcaaagaaattaagctcctgccagttaaggtca |
19377199 |
T |
|
| Q |
272 |
gtgaaacctacttca-agttttatccctcaaactataaagtatttgtttcattatgtaattctaatcaaaactta |
345 |
Q |
| |
|
||| ||||||| || |||||||| || | |||||||||||||||| ||| |||||| ||| ||||||||| |
|
|
| T |
19377200 |
gtgtaacctacaacacagttttattgatctgattataaagtatttgttttattttgtaatactatgcaaaactta |
19377274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 25464370 - 25464610
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagat---gaagactctataaaagaatcattgtatctagggatgggagttgga |
107 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || ||| || ||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25464370 |
cacaaaagaagaaaatcctaaaaatgcaacaccgtctgcaaagagtgaagataacgatgactctataaaagaatcattgtatctaggcttgggagttgga |
25464469 |
T |
|
| Q |
108 |
tttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctct |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||| ||||||| |||| |
|
|
| T |
25464470 |
tttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatggaggcatgcatactttcggtttattaatggagtgagtgacaaactct |
25464569 |
T |
|
| Q |
208 |
atgttattttgacggtaaagttaaatagctttcgcagaaat |
248 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
25464570 |
atgttactttgatcgtaaagttaaaccactttcgcagaaat |
25464610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 49 - 276
Target Start/End: Original strand, 19401084 - 19401311
Alignment:
| Q |
49 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
148 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401084 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
19401183 |
T |
|
| Q |
149 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
248 |
Q |
| |
|
||||| |||||||||||||||| |||||| | ||||||||||| ||| ||| ||||||||| | ||||| |||||||||||||||||||| |||| | |
|
|
| T |
19401184 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
19401283 |
T |
|
| Q |
249 |
tgaggtcttgccaattaaggttagtgaa |
276 |
Q |
| |
|
|||| | |||| | | |||||||||||| |
|
|
| T |
19401284 |
tgagcttttgctagtaaaggttagtgaa |
19401311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 18117312 - 18117519
Alignment:
| Q |
47 |
tacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttt |
146 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18117312 |
tacagagaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatgttt |
18117411 |
T |
|
| Q |
147 |
cttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaa |
246 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| | | || |||| |||||| | |||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
18117412 |
cttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgctgaa |
18117511 |
T |
|
| Q |
247 |
attgaggt |
254 |
Q |
| |
|
| |||||| |
|
|
| T |
18117512 |
actgaggt |
18117519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 282
Target Start/End: Original strand, 19462536 - 19462771
Alignment:
| Q |
47 |
tacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttt |
146 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||| || |||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19462536 |
tacagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgttt |
19462635 |
T |
|
| Q |
147 |
cttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaa |
246 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||| | | || |||| |||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
19462636 |
cttattcggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgcagaa |
19462735 |
T |
|
| Q |
247 |
attgaggtcttgccaattaaggttagtgaaacctac |
282 |
Q |
| |
|
| |||| || ||| | ||||||||||| |||||||| |
|
|
| T |
19462736 |
actgagctcctgctagttaaggttagttaaacctac |
19462771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 19415509 - 19415745
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||| ||||||||||| | || ||||| ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
19415509 |
aagaagaaaatcctacaactgcaacgccatcaacaaagaatgaagattatgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagt |
19415608 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| ||| ||| |||| || |||| | | ||| |||||||||| | |
|
|
| T |
19415609 |
aggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttact |
19415708 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgag |
252 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| |
|
|
| T |
19415709 |
ttggtcgtaaagttaaatagctttcgcagaaactgag |
19415745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 252
Target Start/End: Original strand, 18109790 - 18109991
Alignment:
| Q |
51 |
gagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttctta |
150 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18109790 |
gagaatgaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgtta |
18109889 |
T |
|
| Q |
151 |
ttaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattg |
250 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||| | |||| ||||||||| ||||||||| || ||| ||| |
|
|
| T |
18109890 |
tcaggaaatggaggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttg |
18109989 |
T |
|
| Q |
251 |
ag |
252 |
Q |
| |
|
|| |
|
|
| T |
18109990 |
ag |
18109991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 282
Target Start/End: Original strand, 18148176 - 18148409
Alignment:
| Q |
49 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
148 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| || |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18148176 |
cagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
18148275 |
T |
|
| Q |
149 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
248 |
Q |
| |
|
||||||||||||||||||||| | ||||||| | | || |||| |||||| | |||||||||| | ||| ||||||||||||||||||||| ||| |
|
|
| T |
18148276 |
tattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgccgaagc |
18148375 |
T |
|
| Q |
249 |
tgaggtcttgccaattaaggttagtgaaacctac |
282 |
Q |
| |
|
|||| || ||| | ||||||||||| |||||||| |
|
|
| T |
18148376 |
tgagctcctgctagttaaggttagttaaacctac |
18148409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 19438304 - 19438497
Alignment:
| Q |
49 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
148 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
19438304 |
cagagaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggttctatgtttct |
19438403 |
T |
|
| Q |
149 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgc |
242 |
Q |
| |
|
||||||||||||||||||||| | ||||||| | | || ||| ||||| | || ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
19438404 |
tattaggaaatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagctttcgc |
19438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 49 - 273
Target Start/End: Original strand, 18104854 - 18105078
Alignment:
| Q |
49 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
148 |
Q |
| |
|
||||||||||| |||| || ||||||| ||| || |||||| |||| |||||||| |||||||||||||| |||| |||||||| |||||| ||||||| |
|
|
| T |
18104854 |
cagagaatgaaaatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatgtttct |
18104953 |
T |
|
| Q |
149 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
248 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | || |||| |||||| | |||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
18104954 |
tattaggaaatggaggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgccgaaac |
18105053 |
T |
|
| Q |
249 |
tgaggtcttgccaattaaggttagt |
273 |
Q |
| |
|
|||| || ||| | ||||||||||| |
|
|
| T |
18105054 |
tgagctcctgctagttaaggttagt |
18105078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 16678535 - 16678768
Alignment:
| Q |
19 |
aagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtagg |
118 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| | ||||||| | || || ||||||||||||||||||| || |||||||||| ||||| ||||| |
|
|
| T |
16678535 |
aagaaaatcctaaaaacacaacaccatctacagaaagtgaagataatgatactctaaaagaatcattgtatctgggcttgggagttggttttgcggtagg |
16678634 |
T |
|
| Q |
119 |
tttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttg |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||| ||||||| || |||||||| ||||| | |||| |
|
|
| T |
16678635 |
tttctggggtatttgtggttctttgtttcttattaggaaatggaggcacacatactatcaatttattgatggagtgggcgacaagctgtatgtaactttg |
16678734 |
T |
|
| Q |
219 |
acggtaaagttaaatagctttcgcagaaattgag |
252 |
Q |
| |
|
| |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
16678735 |
atggtaaagttaaataactttcacagaagttgag |
16678768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 24493377 - 24493200
Alignment:
| Q |
94 |
ggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagt |
193 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| ||| |||||| |||| ||||||||||||||||||||||| || | || ||| |||| ||||||| |
|
|
| T |
24493377 |
ggatgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagt |
24493278 |
T |
|
| Q |
194 |
aggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagt |
273 |
Q |
| |
|
||||||| | ||||||| | ||||| ||| ||||| ||||||||| |||||| |||| || ||| | ||||||||||| |
|
|
| T |
24493277 |
gggtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaaaatgagttcctgctagttaaggttagt |
24493200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 24496823 - 24496750
Alignment:
| Q |
88 |
atctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatgg |
161 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||| ||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
24496823 |
atctaggcatgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg |
24496750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 8460891 - 8461168
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
8460891 |
aagaagaaaatcctaaaactgcaatgccgtctacagagaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagt |
8460990 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| | |||||||||||||||| ||| |
|
|
| T |
8460991 |
gggtttttgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaatt |
8461090 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttcaagttttat |
294 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||| || ||| | |||||||||| ||||||||| ||||||||| |
|
|
| T |
8461091 |
ttgatggtaaagttaattagatttcgcagaaattgagctcctgctagcaaaggttagtg-aacctactttaagttttat |
8461168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 15536858 - 15537126
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15536858 |
aagaagaaaatcccaaaaccgcaacaccatccacagagaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggt |
15536957 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || ||||||||||||| ||||||||| | |
|
|
| T |
15536958 |
aggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttact |
15537057 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctactt |
284 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||| || ||| | ||||||| |||| ||||||||| |
|
|
| T |
15537058 |
ttgatcgtaaagttaaacatgtttcacagaaattgagctcctgctagttaaggtcagtggaacctactt |
15537126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 2709251 - 2708979
Alignment:
| Q |
13 |
cagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgc |
112 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||| || || ||||| || || ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2709251 |
cagaagaagaaaatcataaaaaggcaatgccatctagaggaaaagaagacgacgaatctataagagaatcattgtatctaggcatgggagttggatttgc |
2709152 |
T |
|
| Q |
113 |
agtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgtt |
212 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||| || |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
2709151 |
agtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggaggaacacatactatcggtttattgatggagtaggtgacaagctctatgta |
2709052 |
T |
|
| Q |
213 |
attttgacggtaaagttaaatagctttcgcagaaattgaggtcttgccaattaaggttagtgaaacctacttca |
286 |
Q |
| |
|
| ||||| | |||||||||| | ||||| |||||| ||| | | | | |||||||||||| ||||||||||| |
|
|
| T |
2709051 |
actttgatgataaagttaaacaactttcatagaaatcgagcttctacaagttaaggttagtg-aacctacttca |
2708979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 13665623 - 13665395
Alignment:
| Q |
16 |
aagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagt |
115 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | || || ||||| ||||||||||||| |
|
|
| T |
13665623 |
aagaagaaaatcctagaactgcaacaccatctacaaagaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagc |
13665524 |
T |
|
| Q |
116 |
aggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttatt |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || | || |||| || ||||| |||||| ||| | |
|
|
| T |
13665523 |
aggtttctgggggatatgtggttctttgtttcttattagaaaatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattact |
13665424 |
T |
|
| Q |
216 |
ttgacggtaaagttaaatagctttcgcag |
244 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
13665423 |
ttgatggtaaagttaaatagctttcgcag |
13665395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 21906 - 22127
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
21906 |
cacagaagaagaaaatcctaaaactgcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggattt |
22005 |
T |
|
| Q |
111 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatg |
210 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| || |||| |||| || |||| |||||||||||||||| |
|
|
| T |
22006 |
gcagttggtttctgggggatttttggttctttgtttctcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatg |
22105 |
T |
|
| Q |
211 |
ttattttgacggtaaagttaaa |
232 |
Q |
| |
|
||| || || ||||||||||| |
|
|
| T |
22106 |
ttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 2244 - 2029
Alignment:
| Q |
17 |
agaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagta |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| || ||||| ||||||||||||| |
|
|
| T |
2244 |
agaagaaaatcctataactgcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagtt |
2145 |
T |
|
| Q |
117 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattt |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||||| || |||| |||| || |||| ||||||||||||||||||| || |
|
|
| T |
2144 |
ggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttactt |
2045 |
T |
|
| Q |
217 |
tgacggtaaagttaaa |
232 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2044 |
cgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 2780 - 2558
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
2780 |
cacagaagaagaaaatcctaaaactgcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggattt |
2681 |
T |
|
| Q |
111 |
gcagtaggtttctggggg-atttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctat |
209 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||||||||| |||| |||||||||||||||| || |||| |||| || |||| ||||||||||||||| |
|
|
| T |
2680 |
gcagttggtttctgggggtatttttggttctttgtttctcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctat |
2581 |
T |
|
| Q |
210 |
gttattttgacggtaaagttaaa |
232 |
Q |
| |
|
|||| || || ||||||||||| |
|
|
| T |
2580 |
gttacttcgattgtaaagttaaa |
2558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 11821 - 12042
Alignment:
| Q |
11 |
cacagaagaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggattt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| || ||||| |||||||| |
|
|
| T |
11821 |
cacaaaagaagaaaatcctaaaactgcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggattt |
11920 |
T |
|
| Q |
111 |
gcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatg |
210 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||| || |||| |||| || |||| |||||||||||||||| |
|
|
| T |
11921 |
gcagttggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatg |
12020 |
T |
|
| Q |
211 |
ttattttgacggtaaagttaaa |
232 |
Q |
| |
|
||| || || ||||||||||| |
|
|
| T |
12021 |
ttacttcgattgtaaagttaaa |
12042 |
T |
|
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Target: scaffold0640 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 6729 - 6944
Alignment:
| Q |
17 |
agaagaaaatcctaaaactgcaaagccatctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagta |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| || ||||| ||||||||||||| |
|
|
| T |
6729 |
agaagaaaatcctataactgcaaagccatatacagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagtt |
6828 |
T |
|
| Q |
117 |
ggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattt |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||||| || |||| |||| || |||| ||||||||||||||||||| || |
|
|
| T |
6829 |
ggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttactt |
6928 |
T |
|
| Q |
217 |
tgacggtaaagttaaa |
232 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
6929 |
cgattgtaaagttaaa |
6944 |
T |
|
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