View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_15 (Length: 361)
Name: NF18285_low_15
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 32262540 - 32262320
Alignment:
| Q |
13 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
112 |
Q |
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| T |
32262540 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggataaaaaaaacccaatccatgactcattgtttaa |
32262441 |
T |
|
| Q |
113 |
tacataataataacatttttccaccgattgctgcacaaagttatattgccgtccatccnnnnnnnnttatgcaatacaaatctgctcccagccacaacca |
212 |
Q |
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| T |
32262440 |
tacataataataacattgttccaccaattgctgcacaaagttatattgtcgtccatccaaaaaaaattatgcaatacaaatctgcccccatccacaacca |
32262341 |
T |
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| Q |
213 |
atcttgaaatgtgaatctgaa |
233 |
Q |
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||||||||||||||||||||| |
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| T |
32262340 |
atcttgaaatgtgaatctgaa |
32262320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 35614654 - 35614435
Alignment:
| Q |
13 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
112 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||| |
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| T |
35614654 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggat-aaaaaaactcaatc----actcactgtttaa |
35614560 |
T |
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| Q |
113 |
tacataataataacatttttccaccgattgctgcacaaagttatattgccgtccatccnnnnnnnnttatgcaatacaaatctgctcccagccacaacca |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
35614559 |
tacataataataacatttttccaccaattgctgcacaaagttatattgccgtccatccaaaaaaaattatgcaatacaaatctgccctcagccacaacca |
35614460 |
T |
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| Q |
213 |
atcttgaaatgtgaatctgaatcac |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
35614459 |
atcttgaaatgtgaatctgaatcac |
35614435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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