View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18285_low_18 (Length: 304)

Name: NF18285_low_18
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18285_low_18
NF18285_low_18
[»] chr5 (21 HSPs)
chr5 (107-238)||(700742-700868)
chr5 (107-179)||(4689838-4689910)
chr5 (104-179)||(34794770-34794845)
chr5 (104-179)||(2351563-2351638)
chr5 (115-179)||(20119654-20119718)
chr5 (117-179)||(7725959-7726021)
chr5 (117-179)||(7770429-7770491)
chr5 (110-160)||(22493562-22493612)
chr5 (110-179)||(4818284-4818353)
chr5 (110-179)||(35701160-35701229)
chr5 (107-179)||(11963224-11963296)
chr5 (107-179)||(24036116-24036188)
chr5 (107-163)||(32313738-32313794)
chr5 (107-179)||(32528598-32528670)
chr5 (107-175)||(41790603-41790671)
chr5 (110-168)||(32093124-32093182)
chr5 (110-168)||(39918401-39918459)
chr5 (114-179)||(548231-548296)
chr5 (110-179)||(7523054-7523123)
chr5 (110-179)||(8136722-8136791)
chr5 (122-179)||(37148729-37148786)
[»] chr8 (25 HSPs)
chr8 (104-179)||(15001350-15001425)
chr8 (110-179)||(17805573-17805642)
chr8 (107-179)||(37618541-37618613)
chr8 (113-176)||(32918777-32918840)
chr8 (104-179)||(45113939-45114014)
chr8 (110-179)||(40388924-40388993)
chr8 (110-179)||(35225546-35225615)
chr8 (107-179)||(31513733-31513805)
chr8 (107-179)||(45446338-45446410)
chr8 (107-175)||(13407085-13407153)
chr8 (107-179)||(32020151-32020223)
chr8 (107-160)||(12753475-12753528)
chr8 (110-179)||(41709660-41709729)
chr8 (107-163)||(27103858-27103914)
chr8 (107-179)||(34063011-34063083)
chr8 (104-163)||(4599562-4599621)
chr8 (117-163)||(16595308-16595354)
chr8 (110-163)||(6386475-6386528)
chr8 (110-179)||(8673208-8673277)
chr8 (110-179)||(32303738-32303807)
chr8 (110-179)||(34101391-34101460)
chr8 (112-160)||(5969019-5969067)
chr8 (115-179)||(25478131-25478195)
chr8 (107-179)||(29563376-29563448)
chr8 (127-179)||(30501029-30501081)
[»] chr1 (30 HSPs)
chr1 (117-179)||(11772851-11772913)
chr1 (117-179)||(25539748-25539810)
chr1 (114-179)||(26765006-26765071)
chr1 (107-179)||(41968059-41968131)
chr1 (107-179)||(1351644-1351716)
chr1 (107-179)||(17887839-17887911)
chr1 (109-179)||(8838831-8838901)
chr1 (110-179)||(38087208-38087277)
chr1 (110-179)||(42510417-42510486)
chr1 (111-179)||(10384260-10384328)
chr1 (107-179)||(41972804-41972876)
chr1 (110-177)||(24339850-24339917)
chr1 (107-173)||(15540099-15540165)
chr1 (117-179)||(16451019-16451081)
chr1 (110-179)||(844937-845006)
chr1 (124-177)||(1601062-1601115)
chr1 (114-179)||(7183810-7183875)
chr1 (107-179)||(16476364-16476436)
chr1 (107-175)||(23799673-23799741)
chr1 (107-179)||(39281787-39281859)
chr1 (107-179)||(44738251-44738323)
chr1 (108-179)||(3415065-3415136)
chr1 (104-179)||(12890130-12890205)
chr1 (124-179)||(25343415-25343470)
chr1 (107-177)||(45491085-45491155)
chr1 (104-177)||(570281-570354)
chr1 (1-30)||(34283920-34283949)
chr1 (115-175)||(28340521-28340581)
chr1 (107-179)||(35387521-35387593)
chr1 (107-179)||(51703372-51703444)
[»] scaffold0025 (1 HSPs)
scaffold0025 (110-179)||(5583-5652)
[»] chr3 (15 HSPs)
chr3 (107-179)||(51925336-51925408)
chr3 (110-179)||(25860553-25860622)
chr3 (110-179)||(28675674-28675743)
chr3 (107-153)||(40094413-40094459)
chr3 (107-160)||(12349300-12349353)
chr3 (110-179)||(22484874-22484943)
chr3 (110-179)||(51259912-51259981)
chr3 (104-135)||(51813321-51813352)
chr3 (114-179)||(4851592-4851657)
chr3 (107-163)||(1344836-1344892)
chr3 (123-179)||(21373824-21373880)
chr3 (107-179)||(26282516-26282588)
chr3 (115-179)||(29584759-29584823)
chr3 (107-179)||(38213238-38213310)
chr3 (107-179)||(39052968-39053040)
[»] chr6 (24 HSPs)
chr6 (116-179)||(23636107-23636170)
chr6 (107-179)||(10959884-10959956)
chr6 (107-179)||(32805361-32805433)
chr6 (110-179)||(28502342-28502411)
chr6 (110-179)||(29814748-29814817)
chr6 (104-179)||(34684156-34684231)
chr6 (110-179)||(17443146-17443215)
chr6 (107-179)||(15277111-15277183)
chr6 (107-179)||(32410026-32410098)
chr6 (107-160)||(3259580-3259633)
chr6 (110-179)||(4494275-4494344)
chr6 (110-179)||(17867718-17867787)
chr6 (110-179)||(17877501-17877570)
chr6 (107-163)||(2614795-2614851)
chr6 (115-159)||(3379615-3379659)
chr6 (122-178)||(11675563-11675619)
chr6 (104-179)||(18597328-18597403)
chr6 (104-163)||(29054258-29054317)
chr6 (110-168)||(14925632-14925690)
chr6 (107-157)||(31870273-31870323)
chr6 (110-179)||(10324288-10324357)
chr6 (110-179)||(11212140-11212209)
chr6 (110-179)||(24242547-24242616)
chr6 (115-179)||(11381976-11382040)
[»] chr4 (23 HSPs)
chr4 (110-179)||(37931807-37931876)
chr4 (107-179)||(37865639-37865711)
chr4 (110-179)||(52319212-52319281)
chr4 (115-179)||(2786851-2786915)
chr4 (129-179)||(29592787-29592837)
chr4 (110-179)||(21579912-21579981)
chr4 (107-179)||(21202626-21202698)
chr4 (114-168)||(7001752-7001806)
chr4 (110-179)||(7555087-7555156)
chr4 (110-179)||(9807043-9807112)
chr4 (110-179)||(20802662-20802731)
chr4 (110-179)||(24002224-24002293)
chr4 (110-179)||(55065463-55065532)
chr4 (107-179)||(22318511-22318583)
chr4 (107-179)||(23521766-23521838)
chr4 (107-179)||(34929801-34929873)
chr4 (112-179)||(33177165-33177232)
chr4 (110-179)||(43640985-43641054)
chr4 (110-179)||(49152230-49152299)
chr4 (115-179)||(12600772-12600836)
chr4 (107-179)||(29785665-29785737)
chr4 (107-179)||(44649289-44649361)
chr4 (104-144)||(47741191-47741231)
[»] chr7 (34 HSPs)
chr7 (104-179)||(22724663-22724738)
chr7 (110-179)||(21784758-21784827)
chr7 (107-175)||(30599144-30599212)
chr7 (107-179)||(32873905-32873977)
chr7 (107-179)||(36769705-36769777)
chr7 (112-179)||(11822119-11822186)
chr7 (124-179)||(34117360-34117415)
chr7 (112-179)||(41211342-41211409)
chr7 (107-179)||(9913413-9913485)
chr7 (107-179)||(9927101-9927173)
chr7 (107-179)||(18470571-18470643)
chr7 (107-179)||(48445409-48445481)
chr7 (104-147)||(2048872-2048915)
chr7 (117-179)||(43189389-43189451)
chr7 (107-177)||(47947649-47947719)
chr7 (107-177)||(47953079-47953149)
chr7 (110-179)||(30849385-30849454)
chr7 (110-179)||(46633584-46633653)
chr7 (115-179)||(329358-329422)
chr7 (115-179)||(3892170-3892234)
chr7 (115-179)||(10932701-10932765)
chr7 (107-179)||(18386412-18386484)
chr7 (107-179)||(23349426-23349498)
chr7 (104-163)||(1870037-1870096)
chr7 (110-157)||(21133280-21133327)
chr7 (104-179)||(22724164-22724239)
chr7 (110-179)||(3922842-3922911)
chr7 (107-179)||(22631620-22631697)
chr7 (110-179)||(26994364-26994433)
chr7 (122-179)||(48894605-48894662)
chr7 (107-163)||(1363541-1363597)
chr7 (115-179)||(11322029-11322093)
chr7 (107-163)||(12982206-12982262)
chr7 (107-179)||(26371945-26372017)
[»] chr2 (24 HSPs)
chr2 (112-179)||(3913599-3913666)
chr2 (107-179)||(2085955-2086027)
chr2 (107-179)||(39461197-39461269)
chr2 (110-179)||(5278972-5279041)
chr2 (110-179)||(40692188-40692257)
chr2 (107-179)||(26418806-26418878)
chr2 (107-163)||(37308555-37308611)
chr2 (104-163)||(26981822-26981881)
chr2 (107-178)||(28824691-28824762)
chr2 (114-179)||(11114756-11114821)
chr2 (104-149)||(12939433-12939478)
chr2 (110-179)||(13829322-13829391)
chr2 (110-163)||(16104173-16104226)
chr2 (110-179)||(16178018-16178087)
chr2 (110-179)||(42706241-42706310)
chr2 (119-158)||(1247060-1247099)
chr2 (110-177)||(16062213-16062280)
chr2 (116-179)||(35114668-35114731)
chr2 (110-179)||(18685719-18685788)
chr2 (110-179)||(32497798-32497867)
chr2 (110-163)||(34338709-34338762)
chr2 (107-179)||(6896053-6896124)
chr2 (107-179)||(17540597-17540669)
chr2 (107-179)||(27462934-27463006)
[»] scaffold0208 (1 HSPs)
scaffold0208 (107-179)||(2479-2551)
[»] scaffold0054 (1 HSPs)
scaffold0054 (115-179)||(23460-23524)
[»] scaffold0957 (1 HSPs)
scaffold0957 (107-163)||(2636-2692)
[»] scaffold0027 (1 HSPs)
scaffold0027 (107-179)||(15055-15127)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 700742 - 700868
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaaacttttagtatgtagaaagtatttgca 206  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||| |    
T  700742 tcatgtgctgttctaccttgtgttgtattattttgtcttgtactgttatgtccagtatttgc-----tgcaaaacttttagtatgtagaaagtatttgaa 700836  T
Q  207 atacacattactaatgaaatgtatatatatat 238  Q
    ||||||||||||||||||||||||||||||||    
T  700837 atacacattactaatgaaatgtatatatatat 700868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 4689838 - 4689910
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || | ||||||||||    
T  4689838 tcatgtgttgttctgccttatgttgtgttgttctgtcttgtactgttatgtccattacttgctgttttgcaaa 4689910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 34794845 - 34794770
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||||||    
T  34794845 ttatcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttactgttttgcaaa 34794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 2351638 - 2351563
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  2351638 ttatcctgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 2351563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 20119718 - 20119654
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| | |||| |||||||||||| |||||| || |||| ||||||||||    
T  20119718 tgttctgccttgtgttgtgctgttctatcttgtactgttctgtccaatacttactgttttgcaaa 20119654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7725959 - 7726021
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||| | | |||||||||||||||||||| |||| |||| ||||||||||    
T  7725959 ttctaccttgtgttgtgatgtactgtcttgtactgttatgtctagtacttactgttttgcaaa 7726021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7770429 - 7770491
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| ||||||||||||| |||||||||||||  |||||||||||| || | ||||||||||    
T  7770429 ttctgtcttgtgttgtgttgttctgtcttgtacgattatgtccagtacttgctgttttgcaaa 7770491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 22493562 - 22493612
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    |||| |||||| ||||||||||||||||||||||||| |||||| ||||||    
T  22493562 tgtgctgttctaccttgtgttgtgttattctgtcttgcactgttctgtcca 22493612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4818284 - 4818353
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||   | |||| |||||||||||| ||||||||| || | ||||||||||    
T  4818284 tgtgttgttctgccttgtgttgcactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 4818353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 35701229 - 35701160
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| ||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  35701229 tgtgttattctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 35701160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 11963296 - 11963224
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||| |||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  11963296 tcatgtgttattctgctttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 11963224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 24036188 - 24036116
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||| ||| ||||||| | |||||||||||||||||  || ||||| |||  ||||||||||    
T  24036188 tcatgtgttgttctgtcttatgttgtgctgttctgtcttgtactgttcagtacagtacttattgttttgcaaa 24036116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 32313794 - 32313738
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||| ||||||| ||||    
T  32313794 tcatgtgttgttctgtcttgtgttatgttgttctgtcttatacttttatgtcaagta 32313738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 32528670 - 32528598
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||| ||||||  | |||| |||||||||||| ||||||||| ||||  |||||||||    
T  32528670 tcatgtgctgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttactattttgcaaa 32528598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 41790603 - 41790671
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| | || ||||||| ||||||||| |||| ||||||    
T  41790603 tcatgtgttgttctgccttgtgttgtactgttctattttatactgttctgtccagtacttactgttttg 41790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 32093124 - 32093182
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||| |||||||||||||||| |||| ||||||||  ||||||| ||||||||| ||||    
T  32093124 tgtgctgttctgccttgtgttatgttgttctgtctcttactgttctgtccagtacttac 32093182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 39918459 - 39918401
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    ||||||||||| |||||||||||  | |||| |||||||||||| ||||||||| ||||    
T  39918459 tgtgttgttctaccttgtgttgtactgttctatcttgtactgttctgtccagtacttac 39918401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 548296 - 548231
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||  | |||| |||||||||||| ||||||||| |||  ||||||||||    
T  548296 ttgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttaatgttttgcaaa 548231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 7523123 - 7523054
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||| || || | ||||||||||    
T  7523123 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttcctgttttgcaaa 7523054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 8136791 - 8136722
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||||||||||  | |||| ||||||||| || ||||||||| |||| ||||| ||||    
T  8136791 tgtgttgttatgccttgtgttgtactgttctatcttgtactattctgtccagtacttactgttttacaaa 8136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 37148729 - 37148786
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| | |||||| || ||||||| ||||||||| |||| ||||||||||    
T  37148729 ccttgtgttgtgctgttctgtattatactgttttgtccagtacttactgttttgcaaa 37148786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 15001425 - 15001350
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||| |||| ||||||||||    
T  15001425 ttatcttgtgttgttctgccttgtgttgtgctgttctgtcttgtactgttctgtccagtacttactgttttgcaaa 15001350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17805642 - 17805573
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||    
T  17805642 tgtgttgttctaccttgtgttgtgttattctgtcttgtactgttttgtcaagtacttactgttttgcaaa 17805573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 37618541 - 37618613
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||| | || ||| |||||||||||||||||||| |||||||||||||||    
T  37618541 tcatgtgctgttctgccttgtgttgtgctgttatgttttgtactgttatgtccagtacttaccgttttgcaaa 37618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 32918840 - 32918777
Alignment:
Q  113 gttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgc 176  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  32918840 gttgttctgccctgtgttgtgttgttatgtcttgtactgttatgtcaagtatttaccgttttgc 32918777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 45114014 - 45113939
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||| |||||||||||||| |  ||| |||||||||||||||||||||| |||| ||||||||||    
T  45114014 ttatcatgtgttgttatgccttgtgttgtgctgctctatcttgtactgttatgtccagtacttactgttttgcaaa 45113939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 40388993 - 40388924
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||| |||||||||    
T  40388993 tgtgttgttctgccttgtgttgtgctgttatgtcttgtactcttatgtccagtacttaccattttgcaaa 40388924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 35225615 - 35225546
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||||||||| | |||||||||||| || ||||||||| |||| ||||||||||    
T  35225615 tgtgttgttctgtcttgtgttgtgttgtcctgtcttgtactattctgtccagtacttactgttttgcaaa 35225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 31513733 - 31513805
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||||||    
T  31513733 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccaatacttactgttttgcaaa 31513805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 45446410 - 45446338
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  45446410 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 45446338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 13407085 - 13407153
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| | |||||||||| ||||||||| |||| ||||||    
T  13407085 tcatgtgttgttctgccttgtgttgtactgttctatattgtactgttctgtccagtacttactgttttg 13407153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32020151 - 32020223
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32020151 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32020223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 12753475 - 12753528
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||| ||||||    
T  12753475 tcatgtgttgttctgtcttgtgttgtattgttctatcttgtactgttctgtcca 12753528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 41709729 - 41709660
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| ||||||| |||| ||||||||| |||| ||||||||||    
T  41709729 tgtgctgttctgccttgtgttgtactgttctatcttgtattgttctgtccagtacttactgttttgcaaa 41709660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 27103914 - 27103858
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  27103914 tcatgtgctgttctgccttgtgttgtaatgttctatcttgtactgttctgtccagta 27103858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 34063083 - 34063011
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| ||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  34063083 tcatgtgttgtgctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgcggttttgcaaa 34063011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 4599621 - 4599562
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| || |||| ||| |||||    
T  4599621 ttatcatatgttgttctgtcttgtgttgtgttgttctgtcttatattgttttgttcagta 4599562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 16595308 - 16595354
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| |||| ||||||||| ||||||| |||||||||    
T  16595308 ttctgccttgtgttttgttgttctgtcttatactgttctgtccagta 16595354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 6386528 - 6386475
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  6386528 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 6386475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 8673208 - 8673277
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  8673208 tgtgctgttttgccttgtgttgtactgttctatcttgtactgttttgtccagtacttgctgttttgcaaa 8673277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 32303738 - 32303807
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32303738 tgtgctgttctgccttttgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32303807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 34101460 - 34101391
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||| ||||||| ||||||||| ||||  |||||||||    
T  34101460 tgtgatgttctgccttgtgttgtactgttctatcttatactgttttgtccagtacttacttttttgcaaa 34101391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 5969019 - 5969067
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    |||||||||||||||||||||  | |||| |||||||||||| ||||||    
T  5969019 tgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcca 5969067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 25478195 - 25478131
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||| || |||| |||| ||||||| |||| |||| |||| ||||| ||||    
T  25478195 tgttctgccttgtgttgtattgttctatcttatactgttttgtcaagtacttactgttttacaaa 25478131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 29563376 - 29563448
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||||||||  | |||| |||||||||||| ||| || || || | ||||||||||    
T  29563376 tcatgtgttgttctaccttgtgttgtactgttctatcttgtactgttctgttcaatacttgctgttttgcaaa 29563448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 30501081 - 30501029
Alignment:
Q  127 tgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||||||||||| ||||||| |||||||   ||||||||||    
T  30501081 tgttgtgttgttctgtcttgtactattatgtcaagtatttgttgttttgcaaa 30501029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 11772851 - 11772913
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  11772851 ttctgccttgtgttgtgttgttatgtcttgtactgttatgtccagtacttaccgttttgcaaa 11772913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 25539810 - 25539748
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||    
T  25539810 ttctgccttgtgttgtattgttatgtcttgtactgttatgtccagtacttaccgttttgcaaa 25539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 26765006 - 26765071
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  26765006 ttgttctgccttgtgttgtgttgttctatcttgtactgttctgtccagtacttactgttttgcaaa 26765071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 41968059 - 41968131
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||| ||||||| | |||| ||||||||||    
T  41968059 tcatgtattgttccgccttgtgttgtgttgttctgtcttgtactgttctgtccagcacttactgttttgcaaa 41968131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 1351644 - 1351716
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||| |||| |||| ||||||||||    
T  1351644 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 1351716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17887911 - 17887839
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||| || |||| ||||||||| || ||||| ||| |||| ||||||||||    
T  17887911 tcatgtgttgttctgccttgtgttgtattgttctatcttgtactattctgtcccgtacttactgttttgcaaa 17887839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 8838901 - 8838831
Alignment:
Q  109 atgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||  ||||||||||||| ||||||||| ||| |||||||| ||||||||| ||||||||||    
T  8838901 atgtgtttttctatcttgtgttgtgttgttctgtcttatacagttatgtctagtatttactgttttgcaaa 8838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 38087208 - 38087277
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | ||||||||||||||||||||||||||| |||  ||||||||||    
T  38087208 tgtgctgttctgccttatgttgtactgttctgtcttgtactgttatgtccagtacttaatgttttgcaaa 38087277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 42510486 - 42510417
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  42510486 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 42510417  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 10384328 - 10384260
Alignment:
Q  111 gtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| |||| ||||||||| | ||| |||||||||||||||| |||||| |||| ||||||||||    
T  10384328 gtgttgttttgccctgtgttgtgctgttcggtcttgtactgttatgcccagtacttactgttttgcaaa 10384260  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 41972876 - 41972804
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  41972876 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 41972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 24339850 - 24339917
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||||| | ||||||||    
T  24339850 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtatttgctgttttgca 24339917  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 15540099 - 15540165
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttt 173  Q
    |||||||||||| |||||||||||||| | |||||  |||||||||| ||||||||| |||| ||||    
T  15540099 tcatgtgttgttatgccttgtgttgtgctgttctgcattgtactgttctgtccagtacttactgttt 15540165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 16451081 - 16451019
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||  |||||| |||||||||||| ||||||||| |||| ||||||||||    
T  16451081 ttctgccatgtgttgtactattctatcttgtactgttctgtccagtacttactgttttgcaaa 16451019  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 844937 - 845006
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  844937 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 845006  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 1601115 - 1601062
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||    
T  1601115 ttgtgttgtgttgttctttcttgtactgttttgtccagtacttactgttttgca 1601062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 7183875 - 7183810
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| ||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  7183875 ttgttctgtcttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 7183810  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 16476364 - 16476436
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||| |||||| ||| ||||| |||| |||| || |||||||||||||| |||| ||||||||||    
T  16476364 tcatgtggtgttatgccttatgtcgtgttgttctatcttatattgttatgtccagtacttactgttttgcaaa 16476436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 23799673 - 23799741
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    |||||||||||||| |||||| ||||||| |||| |||||||||||| | | ||||| |||| ||||||    
T  23799673 tcatgtgttgttctcccttgtattgtgttgttctttcttgtactgttctatacagtacttactgttttg 23799741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 39281859 - 39281787
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||| |||||||||| | |||| |||| |||| || ||||||||| |||| ||||||||||    
T  39281859 tcatgtgttgttatgcattgtgttgtgctgttctatcttatactattctgtccagtacttactgttttgcaaa 39281787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 44738251 - 44738323
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| ||||||||||| || |||| |||| ||||||| |||| |||| || | ||||||||||    
T  44738251 tcatgtgttgttctaccttgtgttgtattgttctatcttctactgttctgtctagtacttgctgttttgcaaa 44738323  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 3415065 - 3415136
Alignment:
Q  108 catgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| || |||||||| | || |||| |||||||||||| ||||||||| |||| ||||| ||||    
T  3415065 catgtgttgttttgtcttgtgttatattgttctatcttgtactgttttgtccagtacttactgttttacaaa 3415136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 12890205 - 12890130
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||| ||||||||||||||||||  | |||| |||||||||||| |||| |||| ||||  |||||||||    
T  12890205 ttatcctgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtctagtacttactattttgcaaa 12890130  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 25343415 - 25343470
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||| |||||||| |||| |||| ||||||||||    
T  25343415 ttgtcttgtgttgttctgtcttgtacggttatgtctagtagttactgttttgcaaa 25343470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 45491085 - 45491155
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| |||||||||||||||||| || |||| |||| || |||| ||||||||| || | ||||||||    
T  45491085 tcatgtgctgttctgccttgtgttgtattgttctatcttatattgttctgtccagtaattgctgttttgca 45491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 570354 - 570281
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||| ||||||||||||| || ||||||||| |||| ||||||||| || |||| | || |||| ||||||||    
T  570354 ttatcttgtgttgttctgctttatgttgtgttgttctatcttgtactattttgtctaatacttactgttttgca 570281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34283920 - 34283949
Alignment:
Q  1 acacaactttttatctcacgtacaagttat 30  Q
    ||||||||||||||||||||||||||||||    
T  34283920 acacaactttttatctcacgtacaagttat 34283949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 28340521 - 28340581
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||    
T  28340521 tgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttactgttttg 28340581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 35387521 - 35387593
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||||||||  | |||| ||||||| | |||||||||||| || | ||||||||||    
T  35387521 tcatgtgctgttctaccttgtgttgtactgttctatcttgtattattatgtccagtacttgctgttttgcaaa 35387593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 51703372 - 51703444
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| ||||| |||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  51703372 tcatgtattgttttgccttgtgttgttctgttatatcttgtactgttttgtccagtacttgctgttttgcaaa 51703444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 5583 - 5652
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||    
T  5583 tgtgctgttctgccttgtgttgtgttgttctgtcttgtactgttatgtccagtacttgctgttttgcaaa 5652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 51925336 - 51925408
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||| | || |||||||||||||||| ||||||| |||||||||||||||    
T  51925336 tcatgtgctgttctgccttgtgttgtgctgttatgtcttgtactgttatatccagtacttaccgttttgcaaa 51925408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 25860553 - 25860622
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||| ||||||| | |||| |||||||||||| ||||||||  |||||||||||||||    
T  25860553 tgtgttgttatgccttttgttgtgctgttctatcttgtactgttctgtccagtgcttaccgttttgcaaa 25860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 28675743 - 28675674
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||  ||||||||||    
T  28675743 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttattgttttgcaaa 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 40094459 - 40094413
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgtt 153  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||    
T  40094459 tcatgtgttgttctgccttgtgttgtattgttctatcttgtactgtt 40094413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 12349300 - 12349353
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||||||||||    
T  12349300 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttatgtcca 12349353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 22484874 - 22484943
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| |||| ||||||||| | || |||| ||||||||||||||||| |||| ||||||||||    
T  22484874 tgtgctgttctaccttatgttgtgttgtcctatcttatactgttatgtccagtacttactgttttgcaaa 22484943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 51259912 - 51259981
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| | ||||||| |||| ||||||||||    
T  51259912 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctatccagtacttactgttttgcaaa 51259981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 51813352 - 51813321
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgtt 135  Q
    ||||||||||||||||||||||||||||||||    
T  51813352 ttatcatgtgttgttctgccttgtgttgtgtt 51813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 4851592 - 4851657
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||  | |||| |||||||||||| ||||| ||| || | ||||||||||    
T  4851592 ttgttctgccttgtgttgtactgttctatcttgtactgttttgtccggtacttgctgttttgcaaa 4851657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 1344836 - 1344892
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||| ||||||||||  | |||| |||||||||||| |||||||||    
T  1344836 tcatgtgatgttctgtcttgtgttgtactgttctatcttgtactgttttgtccagta 1344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 21373880 - 21373824
Alignment:
Q  123 cttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| | |||||||||||| |||| |||||| || |||| ||||||||||    
T  21373880 cttgtgttgtgctgttctgtcttgtattgttctgtccaatacttactgttttgcaaa 21373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 26282516 - 26282588
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||| ||||||||||  | |||| |||||||||||| | ||||||| || | ||||||||||    
T  26282516 tcatgtgctgttctgtcttgtgttgtactgttctatcttgtactgttctatccagtacttgctgttttgcaaa 26282588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 29584823 - 29584759
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  29584823 tgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 29584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 38213310 - 38213238
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||  |||| |||| || |||||||||||||| ||| || || |||| ||||||||||    
T  38213310 tcatgtgctgttctgcctaatgttatgttgttttgtcttgtactgttctgtacaatacttactgttttgcaaa 38213238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 39052968 - 39053040
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||  ||||||||||  | |||| |||||||||||| ||| ||| ||||||  |||||||||    
T  39052968 tcatgtgttgttctatcttgtgttgtactgttctatcttgtactgttctgttcagcatttactattttgcaaa 39053040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 23636170 - 23636107
Alignment:
Q  116 gttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  23636170 gttctgccttctgttgtgttgttctgtcttgtactgttatatccagtatttactgttttgcaaa 23636107  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 10959956 - 10959884
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||| | ||||||| |||| ||||||||||    
T  10959956 tcatgtgttgttctgccttgtgctgtgatgttctgtcttgtactgttctatccagtacttactgttttgcaaa 10959884  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 32805433 - 32805361
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||||||||||||| || |||| |||||||||||||||||||||| || | ||||||||||    
T  32805433 tcatgtgctgttctgccttgtgttgtattgttctatcttgtactgttatgtccagtacttgctgttttgcaaa 32805361  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 28502411 - 28502342
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  28502411 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 28502342  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 29814817 - 29814748
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  29814817 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 29814748  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 34684156 - 34684231
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| ||||||||| |||||| ||||||||| | ||||||||||||||| |||||| || |||| ||||||||||    
T  34684156 ttatcctgtgttgttatgccttatgttgtgttgtcctgtcttgtactgttttgtccaatacttactgttttgcaaa 34684231  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17443215 - 17443146
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||||| |||| |||||||||||| |||||| ||||| | ||||||||||    
T  17443215 tgtgctgttatgccttgtgttgtgttgttctatcttgtactgttctgtccaatatttgctgttttgcaaa 17443146  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 15277111 - 15277183
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  15277111 tcatgtgttgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 15277183  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32410026 - 32410098
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| |||| ||||||||| ||||||||||    
T  32410026 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctgtctagtatttactgttttgcaaa 32410098  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 3259633 - 3259580
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||    
T  3259633 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcca 3259580  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4494275 - 4494344
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||| ||||||| | |||| || ||||||||| |||| |||| |||| ||||||||||    
T  4494275 tgtgttgttctgccttatgttgtgctgttctatcctgtactgttctgtctagtacttactgttttgcaaa 4494344  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17867787 - 17867718
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| | |||||||||| ||||||||| || | ||||||||||    
T  17867787 tgtgttgttctgccttgtgttgtactgttctatgttgtactgttctgtccagtacttgctgttttgcaaa 17867718  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17877570 - 17877501
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| | |||||||||| ||||||||| || | ||||||||||    
T  17877570 tgtgttgttctgccttgtgttgtactgttctatgttgtactgttctgtccagtacttgctgttttgcaaa 17877501  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 2614851 - 2614795
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||||||||||||||  | |||| |||| ||||||| |||||||||    
T  2614851 tcatgtgttgttctgccttgtgttgtactgttctatcttatactgttttgtccagta 2614795  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 3379659 - 3379615
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtcc 159  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||    
T  3379659 tgttctgcattgtgttgtgttattctgtcttgtattgttctgtcc 3379615  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 11675563 - 11675619
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaa 178  Q
    |||| ||||||||| |||||||||||| ||||||||||| || |||| |||||||||    
T  11675563 ccttttgttgtgttgttctgtcttgtattgttatgtccaatacttactgttttgcaa 11675619  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 18597328 - 18597403
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||| ||| |||||||||| |||||  |||||||||| |||||| || |||| ||||| ||||    
T  18597328 ttattatgtgttgttctacctagtgttgtgttgttctgctttgtactgttctgtccaatacttactgttttacaaa 18597403  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 29054317 - 29054258
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||| |||| ||||||| ||| ||||||||| | || ||||||||||||||||||||||    
T  29054317 ttatcttgtgctgttctgtcttatgttgtgttgtcctatcttgtactgttatgtccagta 29054258  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 14925632 - 14925690
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||| |||| |||||||||||||||| |||| |||| ||||||||||||| ||| ||||    
T  14925632 tgtgctgttatgccttgtgttgtgttgttctatcttttactgttatgtcccgtacttac 14925690  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 31870273 - 31870323
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgt 157  Q
    |||||||||||||| |||| | ||||||| |||| ||||||||||||||||    
T  31870273 tcatgtgttgttctcccttatattgtgttgttctttcttgtactgttatgt 31870323  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 10324288 - 10324357
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| |||||||||||  | |||| |||||||||||| ||||| ||| |||| ||||||||||    
T  10324288 tgtgctgttctaccttgtgttgtaatgttctatcttgtactgttctgtccggtacttactgttttgcaaa 10324357  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 11212209 - 11212140
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||| || || | ||||||||||    
T  11212209 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttgctgttttgcaaa 11212140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 24242616 - 24242547
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  24242616 tgtgctgttctgccttgtgttgtactcttttatcttgtactgttctgtccagtacttgctgttttgcaaa 24242547  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 11382040 - 11381976
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||||||||||| ||| ||||| ||||  |||||||||    
T  11382040 tgttctgccttgtgttgtactgttctatcttgtactgttctgttcagtacttactattttgcaaa 11381976  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 37931876 - 37931807
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||| || ||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  37931876 tgtgctgttctgccttgtattatgttattatgtcttgtactgttatgtccagtacttactgttttgcaaa 37931807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 37865711 - 37865639
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||||||||| ||| |||| ||||||||||    
T  37865711 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttatgtcccgtacttactgttttgcaaa 37865639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 52319281 - 52319212
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||||||||||||| || | ||||||||||    
T  52319281 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttatgtccagtacttgctgttttgcaaa 52319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 2786915 - 2786851
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| ||||||||| ||| ||||||||||||||||||||||| |||| ||||||||||    
T  2786915 tgttttgccttatgttgtgttgttcggtcttgtactgttatgtccagtacttactgttttgcaaa 2786851  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 29592837 - 29592787
Alignment:
Q  129 ttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  29592837 ttgtgttgttctgtcttgtactgatatgtccagtatttactgttttgcaaa 29592787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 21579981 - 21579912
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||| ||||||| ||||||||| |||| ||||||||||    
T  21579981 tgtgttgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttactgttttgcaaa 21579912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 21202698 - 21202626
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||  |||||||||| | ||||||||||||||||| ||||||||| ||||  |||||||||    
T  21202698 tcatgtgctgttctgttttgtgttgtgctgttctgtcttgtactgttttgtccagtacttactattttgcaaa 21202626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 7001806 - 7001752
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||||||| ||||||||||| | |||||||||||||| || ||||||||||||||    
T  7001806 ttgttctgtcttgtgttgtgatgttctgtcttgtactattttgtccagtatttac 7001752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 7555087 - 7555156
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||| || ||||||||||||||| ||||| || ||||  |||||||||    
T  7555087 tgtgatgttctgtcttgtgttgtgttgttttgtcttgtactgttaagtccaatacttactattttgcaaa 7555156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 9807112 - 9807043
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||| | |||| |||||||||||| ||||||||| ||||  |||||||||    
T  9807112 tgtgctgttatgccttgtgttgtgctgttctatcttgtactgttctgtccagtacttactattttgcaaa 9807043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 20802662 - 20802731
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||| ||||| || | ||||||||||    
T  20802662 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgttcagtacttgctgttttgcaaa 20802731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 24002293 - 24002224
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  24002293 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 24002224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 55065463 - 55065532
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  |||| | |||| ||||||||||||||||| || | ||||||||||    
T  55065463 tgtgctgttctgccttgtgttgtactattttatcttatactgttatgtccagtacttgctgttttgcaaa 55065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 22318511 - 22318583
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| || ||||||||||| | |||||  ||||||| || ||||||||| |||| ||||||||||    
T  22318511 tcatgtgttgttatgtcttgtgttgtgctgttctgcattgtactcttctgtccagtacttactgttttgcaaa 22318583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 23521838 - 23521766
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  23521838 tcatgtgctgttctgccttgtgttgtactgttttatcttgtactgttctgtccagtacttgctgttttgcaaa 23521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 34929873 - 34929801
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  |||| | | |||||||||| |||| ||| ||||| ||||||||||    
T  34929873 tcatgtgctgttctgccttgtgttgtactattttattttgtactgttttgtctagtttttactgttttgcaaa 34929801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 33177165 - 33177232
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||| ||||||||||  | |||| |||| ||||||| |||| |||| |||||||||||||||    
T  33177165 tgttgttctgtcttgtgttgtactgttctatcttatactgttctgtcaagtacttaccgttttgcaaa 33177232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 43641054 - 43640985
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||| |||| || | ||||||||||    
T  43641054 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtctagtacttgctgttttgcaaa 43640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 49152230 - 49152299
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||| ||||||| ||||||||| || | ||||||||||    
T  49152230 tgtgctgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttgctgttttgcaaa 49152299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 12600836 - 12600772
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  12600836 tgttctgacttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 12600772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 29785665 - 29785737
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| ||| ||||| |||  ||||||||||    
T  29785665 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctgttcagtacttattgttttgcaaa 29785737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 44649289 - 44649361
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||| ||||  | |||| |||||||||||| ||| | ||| || ||||||||||||    
T  44649289 tcatgtgttgttctcccttgtattgtactgttctttcttgtactgttctgtactgtacttgccgttttgcaaa 44649361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 47741231 - 47741191
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtct 144  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  47741231 ttatcacgtgttgttctgccctgtgttgtgttgttctgtct 47741191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 22724663 - 22724738
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||| ||||||| |||||| |||||||||||| ||||||||| ||||  |||||||||    
T  22724663 ttatcttgtgttgttctgccttatgttgtgatattctatcttgtactgttctgtccagtacttactattttgcaaa 22724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 21784827 - 21784758
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  21784827 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccagtacttactgttttgcaaa 21784758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 30599144 - 30599212
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||    
T  30599144 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttg 30599212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32873905 - 32873977
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32873905 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32873977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 36769705 - 36769777
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  36769705 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 36769777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 11822186 - 11822119
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| |||| | || ||||||||||| ||||| |||| ||||||||||    
T  11822186 tgttgttctgccttgtgttgtgttgttctattttatactgttatgttcagtacttactgttttgcaaa 11822119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 34117415 - 34117360
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  34117415 ttgtcttgtgttgttctgtcttgtactgttatgtccagtacttactgttttgcaaa 34117360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 41211342 - 41211409
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||| || |||| |||||||||||| ||||||||| || | ||||||||||    
T  41211342 tgttgttctgccttgtgttgtattgttctatcttgtactgttttgtccagtacttgctgttttgcaaa 41211409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 9913485 - 9913413
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||| ||||||| |||| |||||||||||| ||| |||||||| | ||||||||||    
T  9913485 tcatgtggtgttctcccttgtattgtgttgttctttcttgtactgttctgtacagtatttgctgttttgcaaa 9913413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 9927173 - 9927101
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||| ||||||| |||| |||||||||||| ||| |||||||| | ||||||||||    
T  9927173 tcatgtggtgttctcccttgtattgtgttgttctttcttgtactgttctgtacagtatttgctgttttgcaaa 9927101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 18470643 - 18470571
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  18470643 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 18470571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 48445481 - 48445409
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| |||||||||||||||| || ||  |||||||||| ||||||||| |||| || |||||||    
T  48445481 tcatgtgttgttatgccttgtgttgtgttgttatgcattgtactgttttgtccagtacttactgtcttgcaaa 48445409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 2048915 - 2048872
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgt 147  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  2048915 ttatcatgtgttgttctgccttgtgttgtgttgttttgtcttgt 2048872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 43189389 - 43189451
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||  | |||| |||| ||||||||||||||||| |||| ||||||||||    
T  43189389 ttctgccttgtgttgtactgttctatcttatactgttatgtccagtacttactgttttgcaaa 43189451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 47947719 - 47947649
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||    
T  47947719 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgca 47947649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 47953149 - 47953079
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||    
T  47953149 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgca 47953079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 30849385 - 30849454
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||||||  | |||| |||||||||||| |||| |||| |||| ||||||||||    
T  30849385 tgtgttgttctgtcttgtgttgtactgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 30849454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 46633653 - 46633584
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| ||||||||| ||||||||| || || | ||||||||||    
T  46633653 tgtgttgttctgccttgtgttgtactgttctatcttgtactattatgtccaatacttgctgttttgcaaa 46633584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 329422 - 329358
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||||| | |||||  |||||||||| ||||||||| |||| ||||||||||    
T  329422 tgttatgccttgtgttgtgctgttctgcattgtactgttctgtccagtacttactgttttgcaaa 329358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 3892170 - 3892234
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||| ||||||| ||||||||| |||| ||||||||||    
T  3892170 tgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttactgttttgcaaa 3892234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10932701 - 10932765
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| ||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  10932701 tgttctgccgtgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 10932765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 18386484 - 18386412
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||| || |||| | |||||| ||| |||||| || || | ||||||||||    
T  18386484 tcatgtgttgttctgccttgtgttgtattgttctattttgtaccgttttgtccaatacttgctgttttgcaaa 18386412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 23349426 - 23349498
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||| |||||| || |||| ||||||||||||||||||| || ||||  |||||||||    
T  23349426 tcatgtgctgttctaccttatgttgttttgttctatcttgtactgttatgtccattacttactattttgcaaa 23349498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 1870096 - 1870037
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||| ||||||||||||||||||  | |||| | |||||||||||||| |||||    
T  1870096 ttatcatgtgctgttctgccttgtgttgtactgttctatattgtactgttatgtacagta 1870037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 21133327 - 21133280
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgt 157  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||||    
T  21133327 tgtgttgttctgccttgtgttgtgatgttctttcttgtattgttatgt 21133280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 22724164 - 22724239
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||| ||||||||| | || |||| |||| || ||||| ||||||||  |||||||||    
T  22724164 ttatcttgtgttgttctgccttatgttgtgttgtcctatcttatactattttgtccggtatttactattttgcaaa 22724239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 3922842 - 3922911
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  |  ||| |||||||||||| ||||||||| || | ||||||||||    
T  3922842 tgtgctgttctgccttgtgttgtactggtctatcttgtactgttctgtccagtacttgctgttttgcaaa 3922911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 22631697 - 22631620
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttat-----tctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||||| |     | |||||||||||||| |||||| || |||  ||||||||||    
T  22631697 tcatgtgttgttctgccttgtgttgtgttgtgttgttatgtcttgtactgttctgtccaatacttattgttttgcaaa 22631620  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 26994364 - 26994433
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||| ||||| ||||||||| || | ||||||||||    
T  26994364 tgtgctgttctgccttgtgttgtactgttctatcttgtcctgttctgtccagtactttctgttttgcaaa 26994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 48894662 - 48894605
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||  | ||| |||||||||||||||||| | ||||||| ||||||||||    
T  48894662 ccttgtgttgtactgttcggtcttgtactgttatgtcaaatatttactgttttgcaaa 48894605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 1363597 - 1363541
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| |||| || |||||| |||| |||| || ||||||||||||||    
T  1363597 tcatgtgttgttctaccttctgatgtgttgttctatcttatattgttatgtccagta 1363541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 11322029 - 11322093
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||||||||||| |||||  || |||| ||||||||||    
T  11322029 tgttctgccttgtgttgtactgttctatcttgtactgttctgtccgatacttactgttttgcaaa 11322093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 12982262 - 12982206
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| | |||||||    
T  12982262 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctctccagta 12982206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 26371945 - 26372017
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||  || ||||||  | |||| |||||||||||||||||||||| |||| ||||| ||||    
T  26371945 tcatgtgatgttctgttttatgttgtactgttctatcttgtactgttatgtccagtacttactgtttttcaaa 26372017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 3913599 - 3913666
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| ||||||||| ||||||| | || ||||||||| ||||||||||    
T  3913599 tgttgttctgccttgtgttgtgttgttctgtcttatactgttctatcaagtatttactgttttgcaaa 3913666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 2086027 - 2085955
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  2086027 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 2085955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 39461269 - 39461197
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| ||||||| |||||||||||||| |||| ||||||||||    
T  39461269 tcatgtgctgttctgccttgtgttgtactgttctatcttgtattgttatgtccagtacttactgttttgcaaa 39461197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 5278972 - 5279041
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||||||||| || |||| |||||||||||| |||| |||| |||| ||||||||||    
T  5278972 tgtgctgttctgccttgtgttgtattgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 5279041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 40692257 - 40692188
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||  | |||| ||||||||||||||||| ||||||||| ||||||||||    
T  40692257 tgtgctgttttgccttgtgttgtactgttctatcttgtactgttatgtctagtatttactgttttgcaaa 40692188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 26418878 - 26418806
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||| |||||| | |||||||||| |||||| |||| | || |||| ||||||||||    
T  26418878 tcatgtgttgttctgccttgcgttgtgctgttctgtcttgcactgttctgtcaaatacttactgttttgcaaa 26418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 37308611 - 37308555
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  37308611 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 37308555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 26981822 - 26981881
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||| |||| ||||||||||||||||||| | || |||||||||||||| |||||||||    
T  26981822 ttatcctgtgctgttctgccttgtgttgtgctgttttgtcttgtactgttctgtccagta 26981881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 28824691 - 28824762
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaa 178  Q
    |||||| |||||||| ||| ||||||| | |||||||||||||||||  |||||||| |||| |||||||||    
T  28824691 tcatgtattgttctgtcttatgttgtgctgttctgtcttgtactgttcagtccagtacttactgttttgcaa 28824762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 11114821 - 11114756
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| ||||||||||||| |||||||||||||  ||||||  |||| |||| ||||||||||    
T  11114821 ttgttctgtcttgtgttgtgttgttctgtcttgtacaattatgtttagtacttactgttttgcaaa 11114756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 12939433 - 12939478
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtac 149  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||    
T  12939433 ttatcttgtgttgttctgccttgtgttgtgctgttctgtcttgtac 12939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 13829391 - 13829322
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||| | |||||  |||||||||| |||||| || |||| ||||||||||    
T  13829391 tgtgatgttctgccttgtgttgtgctgttctgctttgtactgttttgtccaataattactgttttgcaaa 13829322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 16104226 - 16104173
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  16104226 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccagta 16104173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 16178018 - 16178087
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||  |||||||||||||  | ||||||| |||||| ||||||||| |||| ||||||||||    
T  16178018 tgtgttgttctatcttgtgttgtgttgatatgtcttgcactgttctgtccagtacttactgttttgcaaa 16178087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 42706310 - 42706241
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| |||||||||| || |||| ||||||||||||||||| |||  |||| ||||||||||    
T  42706310 tgtgctgttctgtcttgtgttgtattgttctatcttgtactgttatgtcaagtgcttactgttttgcaaa 42706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 1247099 - 1247060
Alignment:
Q  119 ctgccttgtgttgtgttattctgtcttgtactgttatgtc 158  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  1247099 ctgctttgtgttgtgttgttctgtcttgtactgttatgtc 1247060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 16062213 - 16062280
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||||||||||| ||| ||||||||| || |||||||||||||| |||| | || |||| ||||||||    
T  16062213 tgtgttgttctgtcttatgttgtgttgttatgtcttgtactgttttgtcaaatagttactgttttgca 16062280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 35114731 - 35114668
Alignment:
Q  116 gttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  35114731 gttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 35114668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 18685788 - 18685719
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  18685788 tgtgctgttctgtcttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 18685719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 32497867 - 32497798
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | |||| ||||||| |||| ||||||||| |||| ||||||||||    
T  32497867 tgtgctgttctgccttttgttgtactgttctatcttgtattgttctgtccagtacttactgttttgcaaa 32497798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 34338762 - 34338709
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  34338762 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 34338709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 6896124 - 6896053
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| |||||||||||||||| |||||  || ||||||| |||  |||| |||| ||||||||||    
T  6896124 tcatgtgttgttatgccttgtgttgtgttgttctgcattatactgttctgt-tagtacttactgttttgcaaa 6896053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17540669 - 17540597
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| | ||||||| || | ||||||||||    
T  17540669 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctatccagtacttgctgttttgcaaa 17540597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 27462934 - 27463006
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||||||||| | |||||| ||| |||||| | |||| || || | ||||||||||    
T  27462934 tcatgtgttgttctaccttgtgttgtgctgttctgttttgcactgttttatccaatacttgctgttttgcaaa 27463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 2479 - 2551
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  |||||| |||||||||||| ||||||||| || | ||||||||||    
T  2479 tcatgtgctgttctgccttgtgttgtactattctatcttgtactgttctgtccagtacttgctgttttgcaaa 2551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 23524 - 23460
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||| || |||| |||||||||||| |||||||||||| | ||||||||||    
T  23524 tgttctgccttgtgttgtattgttctatcttgtactgttctgtccagtatttgctgttttgcaaa 23460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2636 - 2692
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| ||||||||||| || |||| |||| |||||||||||||||||    
T  2636 tcatgtgttgttctaccttgtgttgtattgttctatcttatactgttatgtccagta 2692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 15127 - 15055
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||  | |||| | |||||||||| ||||| ||| |||| ||||||||||    
T  15127 tcatgtgttgttctgccttatgttgtactgttctattttgtactgttctgtccggtacttactgttttgcaaa 15055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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