View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_19 (Length: 267)
Name: NF18285_low_19
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 4617847 - 4617611
Alignment:
| Q |
15 |
tctgtgatgaatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacactcgagtcacaatgcaaggagtcacaacataaaa |
114 |
Q |
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| T |
4617847 |
tctgtgatgaatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacgctcgagtcacaatgcaaggagtcacaacataaaa |
4617748 |
T |
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| Q |
115 |
ttgatttaatgcttatacattactacaattgtttgttctcaaacatgccttgaatttgaggaagcattatcaaagaacaaggatgtctttgaagcatata |
214 |
Q |
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| T |
4617747 |
ttgatttaatgtttatacattactacaattgtttgttctcaaacatgccttgaatttgaggaagcattatcaaagaacaaggatgtctttgaagcatata |
4617648 |
T |
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| Q |
215 |
aacaaaagaacaatgatgtatttgaaacatataaaca |
251 |
Q |
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| T |
4617647 |
aacaaaagaacaatgatgtatttgaaacatataaaca |
4617611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 4617643 - 4617578
Alignment:
| Q |
186 |
aaagaacaaggatgtctttgaagcatataaacaaaagaacaatgatgtatttgaaacatataaaca |
251 |
Q |
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| T |
4617643 |
aaagaacaatgatgtatttgaaacatataaacaaaagaacaatgatgtatttgaaacatgtaaaca |
4617578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 45985725 - 45985779
Alignment:
| Q |
24 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagata |
78 |
Q |
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| T |
45985725 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctggcagagata |
45985779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 43038450 - 43038372
Alignment:
| Q |
24 |
aatttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagagatacactcgagtcacaatgcaaggagt |
102 |
Q |
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| T |
43038450 |
aatttttgttcattgactgcttcattcctttttgtagcttttgccgtcagagataagcttgagtcactatgcagggagt |
43038372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39242839 - 39242887
Alignment:
| Q |
27 |
ttttgttcatcgactgtttcctttctttttgtagctcttgctgtcagag |
75 |
Q |
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| T |
39242839 |
ttttgttcattgactgtttcctctccttttgtagctcttgctgtcagag |
39242887 |
T |
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