View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_23 (Length: 233)
Name: NF18285_low_23
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 3910425 - 3910222
Alignment:
| Q |
12 |
agcaaaggcatcattaccagctttagcgggcaaagcacgccaacttccatgaccatgttcatcaatataagctaagagtttttgatcttcttctggagtc |
111 |
Q |
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| T |
3910425 |
agcaaaggcatcattaccagctttagcgggcaaagcacgccaacttccatgaccatgttcatcaatataagctaagagtttttgatcttcttctggagtc |
3910326 |
T |
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| Q |
112 |
catggacctttctttaaaccaactttgtcacaacatggtgaacgtcccattttgtagtgagtttaacactaaagactatagtagtttttgctcttattta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3910325 |
catggacctttctttaaaccaactttgtcacaacatggtgaacgtcccattttgtagtgagtttaacactaaagactatagtagtttttgctcttattta |
3910226 |
T |
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| Q |
212 |
tata |
215 |
Q |
| |
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|||| |
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| T |
3910225 |
tata |
3910222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 2948548 - 2948420
Alignment:
| Q |
24 |
attaccagctttagcgggcaaagcacgccaacttccatgaccatgttcatcaatataagctaagagtttttgatcttcttctggagtccatggacctttc |
123 |
Q |
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| T |
2948548 |
attaccagcttttgtaggcaaagaacgccagcttccatgaccatgttcttcaatgtatgataagagcttttgatcttcctcagatgtccatggccctttc |
2948449 |
T |
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| Q |
124 |
tttaaaccaactttgtcacaacatggtga |
152 |
Q |
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| T |
2948448 |
tttaaaccaaccttttcacaacatggtga |
2948420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 31999799 - 31999674
Alignment:
| Q |
27 |
accagctttagcgggcaaagcacgccaacttccatgaccatgttcatcaatataagctaagagtttttgatcttcttctggagtccatggacctttcttt |
126 |
Q |
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| T |
31999799 |
accagcttttgcaggcaatgcacgccagcttccatgaccaaattcttcaatataagctatgagtttttggtcttcctcagcagtccatggtcctttcttc |
31999700 |
T |
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| Q |
127 |
aaaccaactttgtcacaacatggtga |
152 |
Q |
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|| |||||||| |||||||| ||||| |
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| T |
31999699 |
aatccaactttctcacaacaaggtga |
31999674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 31939503 - 31939378
Alignment:
| Q |
27 |
accagctttagcgggcaaagcacgccaacttccatgaccatgttcatcaatataagctaagagtttttgatcttcttctggagtccatggacctttcttt |
126 |
Q |
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| T |
31939503 |
accagcttttgcaggcaatgcatgccagcttccatgaccaaattctttaatataagctatgagttgttggtcttcctcaggagtccatggtcctttcttc |
31939404 |
T |
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| Q |
127 |
aaaccaactttgtcacaacatggtga |
152 |
Q |
| |
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|| | |||||| |||||||| ||||| |
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| T |
31939403 |
aatctaactttctcacaacaaggtga |
31939378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 12551899 - 12551843
Alignment:
| Q |
96 |
atcttcttctggagtccatggacctttctttaaaccaactttgtcacaacatggtga |
152 |
Q |
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|||||||||| | |||||||| |||||||||| ||||| || |||||||||||||| |
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| T |
12551899 |
atcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtga |
12551843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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