View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_24 (Length: 223)
Name: NF18285_low_24
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 51031211 - 51031313
Alignment:
| Q |
14 |
caccacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatgga |
113 |
Q |
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| T |
51031211 |
caccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-taacaacttgaactctcaaagga |
51031309 |
T |
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| Q |
114 |
agtt |
117 |
Q |
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|||| |
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| T |
51031310 |
agtt |
51031313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 51063963 - 51064065
Alignment:
| Q |
14 |
caccacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatgga |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
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| T |
51063963 |
caccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-taacaacttgaactctcaaagga |
51064061 |
T |
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| Q |
114 |
agtt |
117 |
Q |
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|||| |
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| T |
51064062 |
agtt |
51064065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 51035453 - 51035554
Alignment:
| Q |
15 |
accacagagtttactccatcacatccaatcaataccttttccacaaattgcaaacaataattattttaattagacttaacaacttgaactctaaatggaa |
114 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
51035453 |
accacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagac-caacaacttgaactctcaatggaa |
51035551 |
T |
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| Q |
115 |
gtt |
117 |
Q |
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||| |
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| T |
51035552 |
gtt |
51035554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 51031381 - 51031469
Alignment:
| Q |
115 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaaccttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51031381 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcc---tcaatagcaacaaccttt |
51031469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 51064129 - 51064217
Alignment:
| Q |
115 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaaccttt |
206 |
Q |
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| T |
51064129 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcc---tcaatagcaacaaccttt |
51064217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 51069541 - 51069604
Alignment:
| Q |
124 |
ttaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctc |
187 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
51069541 |
ttacctttgttttgatggttgttccatcaacaagatgtagtattttaaagaatccagattcctc |
51069604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 51035572 - 51035641
Alignment:
| Q |
115 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattc |
184 |
Q |
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| T |
51035572 |
gttgtttaattaccttagttttgatggttgttccatcagcaagatggagtatcttagacaagccagattc |
51035641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 40616650 - 40616571
Alignment:
| Q |
124 |
ttaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcatcaatagcaacaaccttt |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||| || | |||||||||||| | |||||||||||||||| |
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| T |
40616650 |
ttaccttggttttgatggttgttccatcggcaagatggagtatcttaaagaaaccagattcc---tgaatagcaacaaccttt |
40616571 |
T |
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