View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_3 (Length: 526)
Name: NF18285_low_3
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 11300136 - 11299930
Alignment:
| Q |
123 |
tttattactctctttcatatattatcctctaaataaccaaatcttcagcatcatcataaacttcgtctttcatttatatcttttttctctcgataaatat |
222 |
Q |
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| T |
11300136 |
tttattactctcttttatatattatcctctaaataaccaaaccttcagcatcatcataaccttcgtctttcatttatagcttttttttctcgataaatat |
11300037 |
T |
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| Q |
223 |
aggatattttatcatccattcagcatcattattcgttattgatgtcaccatac--atacttcgttcgtaatatcc-ttttgttaacagttcagcttacat |
319 |
Q |
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| T |
11300036 |
aggatattttatcatccattcagcatcattattcgttattgatgtcaccatacatatacttcgttcgcaatatcctttttgttaacagttcagcatacat |
11299937 |
T |
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| Q |
320 |
tttcgtg |
326 |
Q |
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||||||| |
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| T |
11299936 |
tttcgtg |
11299930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 398 - 512
Target Start/End: Complemental strand, 11299857 - 11299743
Alignment:
| Q |
398 |
ggccaaagcatgttattaatattagactacctataaaatctttttatttttgagtggacatatcttctatataatctttgttttatgcatttatgtcaat |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11299857 |
ggccaaagcatgttattaatattagactacctataaaatctttttattttttagtggacatatcttctatataatctttgttttatgcatttatgtcaat |
11299758 |
T |
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| Q |
498 |
agcgggattcatagg |
512 |
Q |
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| T |
11299757 |
agcgggattcatagg |
11299743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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