View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_5 (Length: 463)
Name: NF18285_low_5
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 2895407 - 2894980
Alignment:
| Q |
19 |
cctcataccgatgataggattttcatgagactagttttggaatatgtaaacatcagaagcaaaaatattgacattccacaatctaccatgcatgacgtgc |
118 |
Q |
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| T |
2895407 |
cctcacaccgatgataggattttcatgagactagttttggaatatgtaaacatcagaagcaaaaatattgacattccacaatctaccatgcatgacatgc |
2895308 |
T |
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| Q |
119 |
tnnnnnnnncaataaaggaattatatgaaaagccagtatttgcattttaaataagaaaaaccaagtatctattgccatatgtagtaattatatcctcttg |
218 |
Q |
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| T |
2895307 |
taaaaaaaacaataaaggaattatatgaaaagccagtatttgcattttaaataagaaaaaccaagtatctattgccatatgtagtaattatatcttcttg |
2895208 |
T |
|
| Q |
219 |
cttttggaccacagcaatttgaaagaaaaataaagcatgtctacccaaaataaaaaatcgaatcaactcctgaagcgctattgagccaagtgaacaccaa |
318 |
Q |
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| T |
2895207 |
cttttggaccacagcaatttgcaagaaaaataaagcatgtctacccaaaataaaaaatcgaatcaactcctgaagcgctattgagccaagtgaacaccaa |
2895108 |
T |
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| Q |
319 |
tgtgtttacacaaatattttgagaaaagctcttcttgatggaatgaaataatctattttgagacttcatctggttgttcatcatatatacctgatgtaga |
418 |
Q |
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| T |
2895107 |
tgtgtttacacaaatattttgagaaaagctcttcttgatggaatgaaataatctattttgagacttcatctggttgttcatcatatatacctgatgtagt |
2895008 |
T |
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| Q |
419 |
tcaaatgacggcccttcggttaagtctg |
446 |
Q |
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| T |
2895007 |
tcaaatgacggcccttcggttaagtctg |
2894980 |
T |
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