View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_6 (Length: 461)
Name: NF18285_low_6
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 38 - 446
Target Start/End: Complemental strand, 2895938 - 2895532
Alignment:
| Q |
38 |
catggaaaagcaacctttgtatgtactttggttactcctggttgcatacttcatgcagagtcacagtgacagtgagaccatcttgatggtgttgaatata |
137 |
Q |
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| T |
2895938 |
catggaaaagcaacctttgtatgtactttggttactcctggttgcatacttcatgcagagtcacagtgacagtgagaccatcttgatggtgttgaatata |
2895839 |
T |
|
| Q |
138 |
ttttgatgttatcttgagtttttaattagttgcttttaacacataatgtcatgtttatgcaagattcataatattgtcaatgtgatgagtcatatagagt |
237 |
Q |
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| T |
2895838 |
ttttgatgttatcttgagtttttaattagttgcgtttaacacataatgttatgtttatgcaagattcataatattgtcaatgtgatgagtcatatagagt |
2895739 |
T |
|
| Q |
238 |
gcgaggacggaggaaaatgctctcaatcatttcactttaacatcaatctaattgaaatgaga-catctgaaaagaggaaattccactataacttttcacc |
336 |
Q |
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| T |
2895738 |
gcgaggacggaggaaaatgctctcaatcatttcactttaacatcaatttaattgaaatgagaccatctgaaaagaggaaattccactataacttttcact |
2895639 |
T |
|
| Q |
337 |
ttcagataattcaattgaaatgagaagtttgatagaattttgctcctttcagttaataacatgttgttgatgctaaaattgtccatgtcaatggtggagg |
436 |
Q |
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| T |
2895638 |
ttcagataattcaattgaaatgagaagtttgatagaattttgctcctttcagttaataaca---tgttgatgctaaaattgttcatgtcaatggtggagg |
2895542 |
T |
|
| Q |
437 |
agttttaatt |
446 |
Q |
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|||| ||||| |
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| T |
2895541 |
agttctaatt |
2895532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 48875575 - 48875676
Alignment:
| Q |
330 |
tttcaccttcagataattcaattgaaatgagaagtttgatagaattttgctcctttcagttaataacatgttgttgatgctaaaattgtccatgtcaatg |
429 |
Q |
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|||||| |||| |||||| || ||||| |||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |
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| T |
48875575 |
tttcactttcatgtaattcgatcgaaataagaagtttaatagcattttgctcctttcaattaatattatgttgttgatgctaaaattgttgatgtcaatg |
48875674 |
T |
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| Q |
430 |
gt |
431 |
Q |
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|| |
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| T |
48875675 |
gt |
48875676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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