View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_7 (Length: 401)
Name: NF18285_low_7
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 3825790 - 3825416
Alignment:
| Q |
17 |
cagagagaaatatggacagattgttatacctgttttttattaccaaatgattgttttcacttgaaattctagcttttaagttactattcaacatatcttt |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825790 |
cagagagaaatatggacaaattgttatacctgttttttattaccaaatgattgttttcacttgaaattctagcttttaagttactattcaacatatcttt |
3825691 |
T |
|
| Q |
117 |
ttcaatgatgcaaccttgtaatgatgctataggattttgtttggacactcttttgttaacctattattgaacaatgaagaaaatgaagaaaagatgatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825690 |
ttcaatgatgcaaccttgtaatgatgctataggattttgtttggacactcttttgttaacctattattgaacaatgaagaaaatgaagaaaagatgatag |
3825591 |
T |
|
| Q |
217 |
caaagttgataacttgcagcacaagaaataagctttgaggacattttaatattttactttgttctcttttggttcagttatagttagttactatgcttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825590 |
caaagttgataacttgcagcacaagaaataagctttgaggacattttaatattttactttgttctcttttggttcagttatagttagttactatgcttat |
3825491 |
T |
|
| Q |
317 |
gtaaccacatgtataaatacctatgtactcattcaataatcagtaagatttttccctctttcattccctcctatg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3825490 |
gtaaccacatgtataaatacctatgtactcattcaataatcagtaagatttttccctctttcattccctcttatg |
3825416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 382
Target Start/End: Complemental strand, 6394788 - 6394593
Alignment:
| Q |
188 |
caatgaagaaaatgaagaaaaga-tgatagcaaagttgataacttgcagcacaagaaataagctttgaggacattttaatattttactttgttctctttt |
286 |
Q |
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|||||||||| || ||||||||| | |||||||| |||||||| || |||||||| |||||| ||||||| |||| ||||||||| |||||||| |
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| T |
6394788 |
caatgaagaagataaagaaaagaataatagcaaaacagataacttacaatacaagaaacaagcttagaggacaatttagacttttactttcatctctttt |
6394689 |
T |
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| Q |
287 |
ggttcagttatagttagttactatgcttatgtaaccacatgtataaatacctatgtactcattcaataatcagtaagatttttccctctttcattc |
382 |
Q |
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| | | ||| |||||||||| ||| |||| |||| |||||| ||||| |||||||| |||| | |||| |||||||||||||||||| |||| |
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| T |
6394688 |
gttctacttacagttagttacattgcctatgccaccatatgtattaatactcatgtactctttcattcatcaataagatttttccctcttttattc |
6394593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 3805823 - 3805784
Alignment:
| Q |
17 |
cagagagaaatatggacagattgttatacctgttttttat |
56 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |
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| T |
3805823 |
cagaaagaaatatggacagattgttatacctattttttat |
3805784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 3962528 - 3962567
Alignment:
| Q |
17 |
cagagagaaatatggacagattgttatacctgttttttat |
56 |
Q |
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| T |
3962528 |
cagagagaaatatggacagatcgttatacctattttttat |
3962567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 3805532 - 3805454
Alignment:
| Q |
102 |
attcaacatatctttttcaatgatgcaaccttgtaatgatgctataggattttgtttggacactcttttgttaacctat |
180 |
Q |
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||||||||||| || ||||||||||| ||| ||||| ||||||||||| || ||||||||| | ||||||| ||||| |
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| T |
3805532 |
attcaacatatattagtcaatgatgcaccctggtaatcatgctataggaattagtttggacattgctttgttagcctat |
3805454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 4011747 - 4011715
Alignment:
| Q |
20 |
agagaaatatggacagattgttatacctgtttt |
52 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
4011747 |
agagaaatatggacagattgtaatacctgtttt |
4011715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 4026504 - 4026472
Alignment:
| Q |
20 |
agagaaatatggacagattgttatacctgtttt |
52 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
4026504 |
agagaaatatggacagattgtaatacctgtttt |
4026472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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