View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_low_9 (Length: 393)
Name: NF18285_low_9
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 40628240 - 40627949
Alignment:
| Q |
30 |
aaataaaaacacttttccacagcccaatctttaactaaccattaatacattttcaaccacttttcccgatccaaggcaatgatgcaaatagttggtagtc |
129 |
Q |
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| T |
40628240 |
aaataaaaacacttttccacagcccaatctttaactaaccattaatacattttcaaccacttttcccgatccaaggcaatgatgcaaatagttggtagtc |
40628141 |
T |
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| Q |
130 |
ctctgtagcaacccagtaacttatgagttatgacacgtg--nnnnnnnntgttttttccttggtgcacaaagagatatcatcatatcaaggttgtattag |
227 |
Q |
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| T |
40628140 |
ctctgtagcaacccagtaacttatgagttatgacacgtgaaaaaaaatgtgttttttccttggtgcacaaagggatatcatcatatcaaggttgtattag |
40628041 |
T |
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| Q |
228 |
ggttaaagcaatcacacatgtgtattgtacaacatgtcttagcacaaaagttaaaacattagatgtatggctcatttcacacacatatatat |
319 |
Q |
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| T |
40628040 |
gcttaaagcaatcacacatgtgtattgtacaacatctcttagcacaaaagttaaaacattagatgtatggctcatttcacacacacatatat |
40627949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 40627904 - 40627839
Alignment:
| Q |
312 |
atatatattaataagattcttattcacacttgataaatcaagaatcttgctctcaagtatgtatcc |
377 |
Q |
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| T |
40627904 |
atatatatatataagattcttattcacacttgataaatcaagaattttgctctcaagtatgtatcc |
40627839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3535064 - 3535101
Alignment:
| Q |
1 |
agataggggtccaaaagtgcaatttaaccaaataaaaa |
38 |
Q |
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| T |
3535064 |
agataggggtccaaaagtgcaattaaaccaaaaaaaaa |
3535101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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