View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_high_1 (Length: 815)

Name: NF18287_high_1
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_high_1
NF18287_high_1
[»] chr1 (6 HSPs)
chr1 (444-650)||(9535879-9536086)
chr1 (681-811)||(9536084-9536214)
chr1 (331-442)||(9535711-9535820)
chr1 (78-210)||(18581555-18581687)
chr1 (240-294)||(9535627-9535681)
chr1 (453-600)||(27272207-27272356)
[»] chr4 (4 HSPs)
chr4 (78-202)||(19166366-19166491)
chr4 (494-611)||(3462253-3462372)
chr4 (444-673)||(17279071-17279294)
chr4 (319-360)||(19166578-19166619)
[»] chr7 (2 HSPs)
chr7 (497-673)||(16192154-16192330)
chr7 (78-294)||(8834511-8834728)
[»] chr5 (1 HSPs)
chr5 (453-627)||(17349939-17350117)
[»] scaffold0013 (1 HSPs)
scaffold0013 (476-611)||(6104-6241)
[»] chr6 (1 HSPs)
chr6 (496-627)||(23142308-23142442)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 2e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 444 - 650
Target Start/End: Original strand, 9535879 - 9536086
Alignment:
Q  444 atgtatttatattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta 543  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9535879 atgtatttgtattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta 9535978  T
Q  544 tcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattcatcccatcctctagcg 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||||||    
T  9535979 tcatcatcaaacacagattcaatagtcatactctttttaatccatgtattcctaaaaaaaattgaaaaacgaaaaacgctattcatcccatcctctagcg 9536078  T
Q  643 aacttcct 650  Q
    ||||||||    
T  9536079 aacttcct 9536086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 681 - 811
Target Start/End: Original strand, 9536084 - 9536214
Alignment:
Q  681 cctcagtcccacttttgcctttcctatttggacactcggttataaaacgccccagctgctttcatgcataacatattcttgaccccttcatgcattggca 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||| ||    
T  9536084 cctcagtcccacttttgcctttcctatttggacactcggttataaaatgccccagctgctttcatgcataacatatccttgaccccttcatttattgaca 9536183  T
Q  781 tgttcccttgcttaagttccagaaattcttg 811  Q
    |||||||||||||||||||||||||||||||    
T  9536184 tgttcccttgcttaagttccagaaattcttg 9536214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 331 - 442
Target Start/End: Original strand, 9535711 - 9535820
Alignment:
Q  331 gttcatcgacttcaaaagaaaagaacgtggtatattgtctcttatggtgacgttaatcaatgtaaaattctgagtagaggtgttgttggaaatccttcca 430  Q
    ||||||||||||||||||||||||| |||||||  |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9535711 gttcatcgacttcaaaagaaaagaatgtggtat--tgtctcttgtggtgatattaatcaatgtaaaattctgagtagaggtgttgttggaaatccttcca 9535808  T
Q  431 catctaacagaa 442  Q
    |||||| |||||    
T  9535809 catctagcagaa 9535820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 18581687 - 18581555
Alignment:
Q  78 atggacacaaagttaggtgtcactattgtggagaagttgggcacactacacctcattgccatactatgaaagttttcgttctaaaaggcttaatgatgtt 177  Q
    ||||||||||||||| |||||  |||||| |||||||||||||||| ||||||||||| |||||||||||| ||||  |||| |||||  ||||||  |     
T  18581687 atggacacaaagttatgtgtccttattgttgagaagttgggcacaccacacctcattgtcatactatgaaaattttatttctgaaagggctaatgagatg 18581588  T
Q  178 ggtgcctaaacaatccacttgtttcgctaatcc 210  Q
    ||| || |||||||| |||| |||  |||||||    
T  18581587 ggtacccaaacaatctacttatttgactaatcc 18581555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 9535627 - 9535681
Alignment:
Q  240 aaatttacctaaaatgttataagagtgcttattaaccacaagaagaaaatagtat 294  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9535627 aaatttacctaaaatgttataagagtgctttgtaaccacaagaagaaaatagtat 9535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 600
Target Start/End: Original strand, 27272207 - 27272356
Alignment:
Q  453 tattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat 550  Q
    |||||||| ||||||||||  | |||||| | ||||| ||  |||||||||| ||||||||  |||||||| |||||||| ||| |||| |||||||  |    
T  27272207 tattgattattgatttgtttcataagattcattatttgaacctctcaattcagctttgaatattatttgattttcattgttttaattttgttatcattgt 27272306  T
Q  551 caaacacagattcaatagtcatactctttttaatccatgttttcgcaaaa 600  Q
    |  ||||| ||||||||||||||||||| |||||||| | ||| ||||||    
T  27272307 cgcacacaaattcaatagtcatactcttgttaatccacgcttttgcaaaa 27272356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 19166366 - 19166491
Alignment:
Q  78 atggacacaaagttaggtgtcactattgtggagaagttgggcacactacacctcattgccatactatg-aaagttttcgttctaaaaggcttaatgatgt 176  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||| ||||| |||||||||||    
T  19166366 atggacactaagttaggtatcactattgtggagaagttgagcacactacacctcattgcaatactatgaaaagttttggttccaaaagacttaatgatgt 19166465  T
Q  177 tggtgcctaaacaatccacttgtttc 202  Q
     ||||||||||||||| |||||||||    
T  19166466 gggtgcctaaacaatctacttgtttc 19166491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 494 - 611
Target Start/End: Complemental strand, 3462372 - 3462253
Alignment:
Q  494 tctcaattcacctttgaatcatatttgatattcattgtctt-agttttttatcatcatcaaacacagattcaa-tagtcatactctttttaatccatgtt 591  Q
    ||||||||||||||| |||| |||||||||||||||||||| | ||| ||||||||||||  |||| || ||| ||||||||||||| |||||| | | |    
T  3462372 tctcaattcacctttaaatcttatttgatattcattgtcttgattttgttatcatcatcacgcacaaatgcaattagtcatactcttgttaatctacgct 3462273  T
Q  592 ttcgcaaaaaattttgaaaa 611  Q
    |||||||||  |||||||||    
T  3462272 ttcgcaaaaccttttgaaaa 3462253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 673
Target Start/End: Original strand, 17279071 - 17279294
Alignment:
Q  444 atgtatttatattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-t 541  Q
    |||||||| |||||||||||||| || || | |||||| | ||||| ||  |||||||||| ||||||||||||||       |||||||||| |||| |    
T  17279071 atgtatttgtattgattgttgatatgctccataagattcattatttgaacctctcaattcagctttgaatcatattaa-----cattgtcttaattttgt 17279165  T
Q  542 tatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttgaaaacg-aaaaacgctattcatcccatcctctag 640  Q
    |||||||| || ||||| |||||||||||||||| ||  | ||||| | ||||| ||||  |||| |||| | ||||||| |||||| |||  | |||||    
T  17279166 tatcatcaacacacacaaattcaatagtcatacttttggttatccaagctttcgtaaaaccttttaaaaatgaaaaaacgttattcacccc--catctag 17279263  T
Q  641 cgaacttcctatagtttgtcatatagactaaca 673  Q
    || ||||||  |||||||||||||| |||||||    
T  17279264 cgcacttcc--tagtttgtcatatacactaaca 17279294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 19166578 - 19166619
Alignment:
Q  319 agactaatccatgttcatcgacttcaaaagaaaagaacgtgg 360  Q
    ||||| |||||||| |||| ||||||||||||||||||||||    
T  19166578 agactcatccatgtccatcaacttcaaaagaaaagaacgtgg 19166619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 497 - 673
Target Start/End: Original strand, 16192154 - 16192330
Alignment:
Q  497 caattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcg 595  Q
    |||||||| |||||||| |||||||||||||||||| || |||| |||||||||| |  |||| |||| |||||||||||||| |||||||| ||||| |    
T  16192154 caattcacatttgaatcttatttgatattcattgtcctaattttgttatcatcattacgcacaaattcgatagtcatactcttgttaatccacgtttttg 16192253  T
Q  596 caaaaaattttgaa-aacgaaaaacgctattcatcccatcctctagcgaacttcctatagtttgtcatatagactaaca 673  Q
    |||||  ||||||| ||||||||| |||||| |  ||  ||||||||| |||||   ||||||||||||||||||||||    
T  16192254 caaaaccttttgaagaacgaaaaatgctattgacacccccctctagcgcacttc--ttagtttgtcatatagactaaca 16192330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 8834511 - 8834728
Alignment:
Q  78 atggacacaaagttaggtgtcactattgtggagaagttgggcacactacacctcat--tgccatactatgaaagttttcgttctaaaaggcttaatgatg 175  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||  |||| |||  ||||||  |||||||||| | |||| ||| || |||| ||||    
T  8834511 atggacacaaagttaggtgtcattattgtagagaagttgggcacacaccaccacattatgccatgttatgaaagttatggttccaaatggtttaaggatg 8834610  T
Q  176 ttggtgcctaaacaatccacttgtttcgctaatccgaataaatccaatatatgatggggacctgaaatttacctaaaatgttataagagtgcttattaac 275  Q
    |  |||||||| ||||| ||||  | | ||||||| ||   | ||||  |||| ||||||||| |||||||||||| || || || |||||| | | |||    
T  8834611 tgtgtgcctaaccaatctactttatccactaatcccaa-ggacccaacttatgttggggacctaaaatttacctaacatattgtaggagtgcctttcaac 8834709  T
Q  276 cacaagaagaaaatagtat 294  Q
    ||  |||||||||| ||||    
T  8834710 catgagaagaaaatggtat 8834728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 453 - 627
Target Start/End: Original strand, 17349939 - 17350117
Alignment:
Q  453 tattgattgttgatttgttctaaaagattaaatatttaaa-ttctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat 550  Q
    ||||||||||||||||  | || |||| | | ||||| || ||||||||||||||||||||| || || || |||||||||||| |||| |||||||||     
T  17349939 tattgattgttgattttctttataagagtcattatttgaacttctcaattcacctttgaatcttagtttattttcattgtcttaattttgttatcatcac 17350038  T
Q  551 caaacacagattcaatagtcatactcttt-ttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattca 627  Q
     || |||| |||||||||||||||||||| |||||||| | ||| ||||||  ||||| ||||||||||||| ||||||    
T  17350039 taagcacaaattcaatagtcatactctttgttaatccacgcttttgcaaaatcttttgaaaaacgaaaaacgttattca 17350117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 611
Target Start/End: Complemental strand, 6241 - 6104
Alignment:
Q  476 aagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcata 573  Q
    |||||| | ||||||||| |||||||| | ||||||||| |||||| |||||||||||||| |||| ||||||||||||  |||| ||||||||||||||    
T  6241 aagattcattatttaaatctctcaatttagctttgaatcttatttgttattcattgtcttaattttgttatcatcatcatgcacaaattcaatagtcata 6142  T
Q  574 ctctttttaatccatgttttcgcaaaaaattttgaaaa 611  Q
     | || | |||||| ||||||||||||  |||||||||    
T  6141 gttttgtgaatccacgttttcgcaaaaccttttgaaaa 6104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 627
Target Start/End: Complemental strand, 23142442 - 23142308
Alignment:
Q  496 tcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttc 594  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||  |||| |||||||| || |||| |  |||||||| | ||||    
T  23142442 tcaattcaactttgaatcttatttgatattcattgtcttaattttgttatcatcatcacgcacaaattcaataatcgtactttagttaatccacgctttc 23142343  T
Q  595 gcaaaaaattttgaaaa--cgaaaaacgctattca 627  Q
    |||||||  ||| ||||  ||||||||||||||||    
T  23142342 gcaaaaaccttttaaaaaccgaaaaacgctattca 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University