View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_high_13 (Length: 244)

Name: NF18287_high_13
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_high_13
NF18287_high_13
[»] chr6 (2 HSPs)
chr6 (99-235)||(28976103-28976239)
chr6 (17-103)||(28979679-28979765)
[»] chr1 (1 HSPs)
chr1 (23-176)||(37422974-37423126)
[»] chr8 (1 HSPs)
chr8 (24-184)||(6013534-6013692)
[»] chr7 (1 HSPs)
chr7 (26-96)||(47799254-47799324)
[»] chr4 (1 HSPs)
chr4 (48-96)||(1013347-1013395)
[»] chr3 (1 HSPs)
chr3 (25-96)||(49144731-49144802)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 28976239 - 28976103
Alignment:
Q  99 aagaacatgctcttatcatgcattctctacactgaannnnnnnatactatcttccctaattattctctctcatctctcacctaccacaacatcaagctca 198  Q
    |||||||||||||||||||||||||||||| |||||        ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  28976239 aagaacatgctcttatcatgcattctctacgctgaatttttttgtactatcttccctaactattctctctcatctctcacctaccactacatcaatctca 28976140  T
Q  199 tgatcccaactctcctccatactcttctcattcttct 235  Q
     ||||||||||||||||||||||||||||||||||||    
T  28976139 cgatcccaactctcctccatactcttctcattcttct 28976103  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 28979765 - 28979679
Alignment:
Q  17 atgaaatgggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaatttttaccactaaattaaaagaagaa 103  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||| ||||| |||||||||||||    
T  28979765 atgaaatgggtggcatttagcctgggtaagcaaagtttttttccaccattgaaaagttgaatttttatcactagattaaaagaagaa 28979679  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 37423126 - 37422974
Alignment:
Q  23 tgggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaatttttaccactaaattaaaagaagaacatgctcttatcatgcatt 122  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| |||||||||||| |    
T  37423126 tgggtggcatttagcatgggtaagcaaagttttttcccaccatgggaaagttgaatttctaccactagattaaacgaagaacatgttcttatcatgcact 37423027  T
Q  123 ctctacactgaannnnnnnatactatcttccctaattattctctctcatctctc 176  Q
    ||||||||||||       || |||||||||||||  |||||||||||||||||    
T  37423026 ctctacactgaa-ttttttatcctatcttccctaaccattctctctcatctctc 37422974  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 6013692 - 6013534
Alignment:
Q  24 gggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaatttttaccactaaattaaaagaagaacatgctcttatcatgcattc 123  Q
    ||||| ||||||||||   ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||  |||||||||||| ||    
T  6013692 gggtgtcatttagcctatgtaagcaaagttttttcccaccat-ggaaagttgaatttctaccactagattaaaagaagaacatattcttatcatgcactc 6013594  T
Q  124 tctacactgaannnnnnnatactatcttccctaattattctctctcatctctcacctacca 184  Q
    |||||||||||       || |||||||||||||  |||||||||||||||||||| ||||    
T  6013593 tctacactgaa-ttttttatcctatcttccctaaccattctctctcatctctcacccacca 6013534  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 47799254 - 47799324
Alignment:
Q  26 gtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaatttttaccactaaattaaa 96  Q
    |||||||||||||||| ||||  ||||||||||||| ||| ||||||||  |||||||||| || ||||||    
T  47799254 gtggcatttagcctgggtaagtgaagttttttcccatcatgggaaagtttgatttttaccattagattaaa 47799324  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 1013347 - 1013395
Alignment:
Q  48 aaagttttttcccaccatcggaaagttgaatttttaccactaaattaaa 96  Q
    |||||||||||||||||| ||||||||| |||||||||| || ||||||    
T  1013347 aaagttttttcccaccataggaaagttggatttttaccattagattaaa 1013395  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 49144731 - 49144802
Alignment:
Q  25 ggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaatttttaccactaaattaaa 96  Q
    ||||||||||||||| | ||||  ||||||||||||| ||| | ||||||||||||||| || || ||||||    
T  49144731 ggtggcatttagcctaggtaagtgaagttttttcccaacatagaaaagttgaatttttatcattagattaaa 49144802  T

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