View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_high_4 (Length: 520)
Name: NF18287_high_4
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Complemental strand, 4239746 - 4239273
Alignment:
| Q |
12 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatggtggattcaagcagtgcacgtgacacaaatttatcatcatcctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4239746 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatggtggattcaagcagtgcacgtgacacaaatttatcatcatcctt |
4239647 |
T |
|
| Q |
112 |
ggagctggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4239646 |
ggagctggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgat---caacacaactgct |
4239550 |
T |
|
| Q |
212 |
gctactgttgccacaactccaataatgagaccaaacaacagtattgcagccactactgacaaagctatcaagacaacaactccaatgatgagtcctagta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4239549 |
---actgttgccacaactccaataatgagaccaaacaacagtattgcagccactactgacaaagctatcaagacaacaactccaatgatgagtcctagta |
4239453 |
T |
|
| Q |
312 |
attacggtactagtccaagaaatcaaaatgtaaggtacagccaaacaagccctagtagtaacagcggtaacaacaccgttagggtttgttctgattgtag |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4239452 |
atttcggtactagtccaagaaatcaaaatgtaaggtacagccaaacaagccctagtagtaacagcggtaacaacaccgttagggtttgttctgattgtag |
4239353 |
T |
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| Q |
412 |
tacatctcataccccactttggaggagtggccctatgggtccaaaggtaattcgttaaactcttctcccaaacttattca |
491 |
Q |
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| T |
4239352 |
tacatctcataccccactttggaggagtggccctatgggtccaaaggtaatttattaaactcttctcccaaacttattca |
4239273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 117 - 417
Target Start/End: Complemental strand, 19938669 - 19938375
Alignment:
| Q |
117 |
tggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgctgctac |
216 |
Q |
| |
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|||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
19938669 |
tggatgatagcaataaaaagaatagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatga---acacaacttct---ac |
19938576 |
T |
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| Q |
217 |
tgttgccacaactccaataatgagaccaaacaacagtattgcagccactactgacaaagctatcaagacaacaactccaatgatgagtcctagtaattac |
316 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
19938575 |
agttaccacaactccaataatgagaccaaacaaaagtattgcagccactactgacaaagatatcaagacaacaactccaatgatgagacctagtaattac |
19938476 |
T |
|
| Q |
317 |
ggtactagtccaagaaatcaaaatgtaaggtacagccaaacaagccctagtagtaacagcggtaacaacaccgttagggtttgttctgattgtagtacat |
416 |
Q |
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| T |
19938475 |
ggcactagtccaagatatcaaaatataaggtacaaccaaacaagccctagaagtaacagcggtaacaacaccgttagggtttgttctgattgtagtacat |
19938376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 117 - 392
Target Start/End: Complemental strand, 19921810 - 19921541
Alignment:
| Q |
117 |
tggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgctgctac |
216 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| | |
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| T |
19921810 |
tggaagatagcagcaaaaagaatagttacgggtctgagaaatggatgtcttcaaagatgaggttaatgaataaaatgat---caacacaactgct---at |
19921717 |
T |
|
| Q |
217 |
tgttgccacaactccaataatgagaccaaacaacagtattgcagccactactgacaaagctatcaagacaacaactccaatgatgagtcctagtaattac |
316 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
19921716 |
tgttaccacaactccaataatgagactaaacaacagtattgcagccactactaacaaagctatcaagacaacaactccaatgatgagacctattaattac |
19921617 |
T |
|
| Q |
317 |
ggtactagtccaagaaatcaaaatgtaaggtacagccaaacaagccctagtagtaacagcggtaacaacaccgtta |
392 |
Q |
| |
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|| |||||||||||| |||||||| | |||||| |||||||| |||||||||||| || ||||| |||||||||| |
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| T |
19921616 |
ggcactagtccaagatatcaaaatacagggtacaaccaaacaaaccctagtagtaatagtggtaaaaacaccgtta |
19921541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 19938720 - 19938667
Alignment:
| Q |
12 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatgg |
68 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
19938720 |
catcatcaagcaatcaccaacaac---tctataattcatcatgtgagtcagttatgg |
19938667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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