View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_low_10 (Length: 359)

Name: NF18287_low_10
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_low_10
NF18287_low_10
[»] chr1 (5 HSPs)
chr1 (1-347)||(18416769-18417115)
chr1 (43-347)||(52963647-52963953)
chr1 (27-262)||(19937257-19937491)
chr1 (273-325)||(19936964-19937016)
chr1 (13-89)||(36428036-36428112)
[»] chr4 (9 HSPs)
chr4 (1-347)||(33834267-33834609)
chr4 (2-347)||(37917144-37917489)
chr4 (1-274)||(7566786-7567051)
chr4 (14-190)||(27519029-27519205)
chr4 (11-124)||(27464370-27464483)
chr4 (146-275)||(13041083-13041212)
chr4 (222-296)||(23298794-23298868)
chr4 (12-113)||(37076444-37076545)
chr4 (8-61)||(46594316-46594369)
[»] chr8 (1 HSPs)
chr8 (1-347)||(37000306-37000650)
[»] chr7 (3 HSPs)
chr7 (1-274)||(8984292-8984557)
chr7 (8-61)||(40543321-40543374)
chr7 (8-60)||(7928721-7928773)
[»] chr5 (2 HSPs)
chr5 (6-276)||(32331489-32331759)
chr5 (146-275)||(30592248-30592377)
[»] chr3 (3 HSPs)
chr3 (228-305)||(35000930-35001007)
chr3 (146-255)||(53990153-53990262)
chr3 (177-263)||(9187649-9187735)
[»] chr2 (1 HSPs)
chr2 (146-255)||(17726411-17726520)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 18417115 - 18416769
Alignment:
Q  1 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||     
T  18417115 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagatagggatgcttgattgtaaaccagttgatactcctatgaaccc 18417016  T
Q  101 taatgtgaggcttttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagacca 200  Q
     ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18417015 caatgtgaagcttttacagaatcaaggagatttgtatcctgacccaggaagatacagaagtttagttgggaagctgaattatcttactatgactagacca 18416916  T
Q  201 gatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggt 300  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  18416915 gatatttcgtttgatgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggtttgaatcttgaggtatattaaagggt 18416816  T
Q  301 cgcctggaaaaggacttgtttattcatacagaggacataccaatatt 347  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  18416815 cacctggaaaaggacttgtttattcatacagaggacataccaatatt 18416769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 43 - 347
Target Start/End: Original strand, 52963647 - 52963953
Alignment:
Q  43 atattttggaagagacagggatgcttgattgtaaa------ccagttaatactcctatgaaccttaatgtgaggcttttacagaatcaaggagatttgta 136  Q
    ||||||||||||||||| |||||||||||||||||      |||||| ||||||||||| |||  ||||||| |||||||| |||||||| ||| |||||    
T  52963647 atattttggaagagacaaggatgcttgattgtaaatgtaaaccagttgatactcctatggaccccaatgtgaagcttttactgaatcaagtagagttgta 52963746  T
Q  137 tcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaattt 236  Q
    | || ||| ||| ||||     |||||||||||||||||||||||||| |||  |||||||||||||| || |||||||||||| ||||| |||||||||    
T  52963747 ttctaacccaggcagatg----aggttagttgggaagctgaattatctcactgcgactagaccagatactttgtttgttgttagtgttgtaagtcaattt 52963842  T
Q  237 ttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggtcgcctggaaaaggacttgtttattcatacagaggac 336  Q
     |||||||||||||||||||||||| || ||| || ||||  ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |    
T  52963843 ctgaactcaccttgtgatagccattcgactgttgtagttcgaatcttgaggtatattaaagggtcacctggaaaaggacttatttattcagacagaggcc 52963942  T
Q  337 ataccaatatt 347  Q
    ||| |||||||    
T  52963943 ataacaatatt 52963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 19937491 - 19937257
Alignment:
Q  27 agaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaaccttaatgtgaggcttttacagaatcaag 126  Q
    |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||| ||||||||||  | |  ||||||| |||| ||  ||||||      
T  19937491 agaaaatatgttcttgatatcttggaagaaacaaggatgcttgattgtaaaccggttgatactcctatagatcccaatgtgaagcttctatggaatcagc 19937392  T
Q  127 gagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgt 226  Q
    | ||    ||||   ||| | | | ||||||||||||||||| ||| |||||| | || |||||||| | |||| ||||||  ||||||||||| |||||    
T  19937391 gggagccatatctgaacccatgcaaatacagaaggttagttgagaaactgaatcacctcactatgacaaaaccatatattt-ttttgttgttagtgttgt 19937293  T
Q  227 gagtcaatttttgaactcaccttgtgatagccattg 262  Q
    |||||||||| | || ||||||| ||||| ||||||    
T  19937292 gagtcaatttctaaattcaccttttgataaccattg 19937257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 19937016 - 19936964
Alignment:
Q  273 gttcagatcttgaggtatattaaagggtcgcctggaaaaggacttgtttattc 325  Q
    |||| ||||||||||| |||||||||||||| |||| || |||||||||||||    
T  19937016 gttcggatcttgaggtgtattaaagggtcgcttggagaatgacttgtttattc 19936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 36428036 - 36428112
Alignment:
Q  13 ttgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatact 89  Q
    |||||||||||| | ||||||| |||||  |||| |||||||||||   || |||||||||||||||| || |||||    
T  36428036 ttgctatttctctgtgaaaatatgttctctatatcttggaagagacgaagaagcttgattgtaaaccaattgatact 36428112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 33834267 - 33834609
Alignment:
Q  1 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  33834267 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttgatactcctatggaccc 33834366  T
Q  101 taatgtgaggcttttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagacca 200  Q
     ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    ||||||||||||||||||||||||||||||||||||||||||    
T  33834367 caatgtgaagcttttacagaatcaaggagatttgtatcctgacccaggcagata----aggttagttgggaagctgaattatcttactatgactagacca 33834462  T
Q  201 gatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggt 300  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33834463 gatatttcgtttgctgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggt 33834562  T
Q  301 cgcctggaaaaggacttgtttattcatacagaggacataccaatatt 347  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  33834563 cgcctggaaaaggacttgtttattccgacagaggacataccaatatt 33834609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 347
Target Start/End: Complemental strand, 37917489 - 37917144
Alignment:
Q  2 ccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacctt 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||| |||      
T  37917489 ccaagaaggcattactatttctcagagaaaatacgttcttgatattttggaagagacagtgatgcttgattgtaaatcagttgatactcatatggacccc 37917390  T
Q  102 aatgtgaggcttttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccag 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37917389 aatgtgaagcttttacagaatcaaggagatttgtatcctgacccaagcagatacagaaggttagttgggaaactgaattatcttactatgactagaccag 37917290  T
Q  202 atatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggtc 301  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37917289 atatttcgtttgctgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtc 37917190  T
Q  302 gcctggaaaaggacttgtttattcatacagaggacataccaatatt 347  Q
     |||||||||||||||||||||||| ||||| ||| || |||||||    
T  37917189 acctggaaaaggacttgtttattcagacagaagacgtatcaatatt 37917144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 7567051 - 7566786
Alignment:
Q  1 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacct 100  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||| |  ||||||||||| |||||||| ||||||| |||| ||||||| ||| |||     
T  7567051 cccaagaaggcattgctatttttcagggaaaatacgttctcgatatctatgaagagacagg-atgcttgagtgtaaactagttgatactcccatggaccc 7566953  T
Q  101 taatgtgaggcttttacagaatcaaggagatttgtatcctgacc-aaggaagatacagaaggttagttgggaagctgaattatcttactatgactagacc 199  Q
     ||||||| |||||||        ||||||   ||||||| ||| |||| | |||||| |||||  |||||| |||||||||||| ||||||||||||||    
T  7566952 caatgtgaagctttta--------aggagagccgtatcctaacccaaggcacatacaggaggttgattgggaggctgaattatctcactatgactagacc 7566861  T
Q  200 agatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggt 274  Q
    |||||||||||||| || ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  7566860 agatatttcgtttgatggtagtgttgtgagtcaacttctgaactcaccttgtgatagccattggaatgtcgtggt 7566786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 27519029 - 27519205
Alignment:
Q  14 tgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaaccttaatgtgaggctt 113  Q
    |||||||||| |||||||||| ||||||||||| |||| ||| ||| ||||||| |||||||||||||||  ||||||| || ||| |||||||| ||||    
T  27519029 tgctatttcttagagaaaatatgttcttgatatcttgggagaaacatggatgctcgattgtaaaccagttgctactcctttggaccataatgtgaagctt 27519128  T
Q  114 ttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactat 190  Q
    ||||| ||||| ||||| | ||||||||| | ||  |||||||| ||| |||||| ||| ||||||||||| |||||    
T  27519129 ttacaaaatcatggagagtggtatcctgatccagacagatacaggaggctagttgtgaaactgaattatctcactat 27519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 27464483 - 27464370
Alignment:
Q  11 cattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaaccttaatgtgagg 110  Q
    ||||| |||||||||||||||||| ||| || |||| |||||||| ||| ||||||| |||||||||||| || ||||||||||||||| | |||||| |    
T  27464483 cattgttatttctcagagaaaatatgtttttcatatcttggaagaaacaaggatgctcgattgtaaaccaattgatactcctatgaaccctgatgtgaag 27464384  T
Q  111 cttttacagaatca 124  Q
    | ||||||||||||    
T  27464383 cctttacagaatca 27464370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 13041083 - 13041212
Alignment:
Q  146 aggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaatttttgaactca 245  Q
    |||||| ||| | |||||||||||||||||||||||| | || ||||| ||||| |||||||| | ||  || |  ||||| |||||||| ||||| ||     
T  13041083 aggaaggtaccggaggttagttgggaagctgaattatttgaccatgacaagacctgatatttcatatgcagtcactgttgttagtcaattcttgaattcc 13041182  T
Q  246 ccttgtgatagccattggaatgtcgtggtt 275  Q
    ||||||||||  |||||| |||| ||||||    
T  13041183 ccttgtgatattcattgggatgttgtggtt 13041212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 23298868 - 23298794
Alignment:
Q  222 gttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaa 296  Q
    |||| |||||||||| | ||||   ||||| |||||||||||||||  ||||||| |||||| ||||||||||||    
T  23298868 gttgcgagtcaatttctaaactgggcttgtaatagccattggaatgcagtggttcggatcttaaggtatattaaa 23298794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 37076444 - 37076545
Alignment:
Q  12 attgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaaccttaatgtgaggc 111  Q
    |||||||| |||||||| || || |  |||||||||||||| || |||||  |  | ||||||||||||||| ||||||||||| | | |||||||| ||    
T  37076444 attgctatctctcagaggaagtatgcccttgatattttggacgaaacaggtcttatagattgtaaaccagttgatactcctatggatcctaatgtgaagc 37076543  T
Q  112 tt 113  Q
    ||    
T  37076544 tt 37076545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 46594369 - 46594316
Alignment:
Q  8 aggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagg 61  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || ||||||||    
T  46594369 aggcattgctatctctcagagaaaatatgcccttgatattttagaggagacagg 46594316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 37000306 - 37000650
Alignment:
Q  1 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacct 100  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||| |||||||| ||| |||||||| |||||||||||| | |||||| | || |||     
T  37000306 cccaagtaggcattgttatttctcagagaaaatacgttttcgatatcttggaagaaacatggatgcttaattgtaaaccagatgatactcatgtggaccc 37000405  T
Q  101 taatgtgaggcttttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagacca 200  Q
     ||||||| |||||||| ||| |||||||||||||||||| ||| | |||||||||| |||| |||||||| ||| |||||||| | |||||||||| ||    
T  37000406 caatgtgaagcttttacggaaccaaggagatttgtatcctaacccaagaagatacaggaggtaagttgggaggctaaattatctcaatatgactagagca 37000505  T
Q  201 gatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggt 300  Q
     |||||||||||||| |||| ||  ||||||||||||| | ||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  37000506 tatatttcgtttgtttttagtgt--tgagtcaattttttatctcaccttgtgatagccattggaatgctgtggttcggatcttgcggtatattaaagggt 37000603  T
Q  301 cgcctggaaaaggacttgtttattcatacagaggacataccaatatt 347  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  37000604 cgcctgaaaaaggacttgtttattcagacagaggccataccaatatt 37000650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 8984292 - 8984557
Alignment:
Q  1 cccaagaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctatgaacct 100  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||| |  ||||||||||| |||||||| ||||||| |||| ||||||||||  |||     
T  8984292 cccaagaaggcattgctatttttcagggaaaatacgttctcgatatctatgaagagacagg-atgcttgagtgtaaactagttgatactcctatagaccc 8984390  T
Q  101 taatgtgaggcttttacagaatcaaggagatttgtatcctgacc-aaggaagatacagaaggttagttgggaagctgaattatcttactatgactagacc 199  Q
     ||||||| |||||||        ||||||   ||||||||||| |||| | |||||| |||||  |||||| |||||||||||| ||||||||||||||    
T  8984391 caatgtgaagctttta--------aggagagccgtatcctgacccaaggcacatacaggaggttgattgggaggctgaattatctcactatgactagacc 8984482  T
Q  200 agatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggt 274  Q
    |||||||||||||| || ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  8984483 agatatttcgtttgatggtagtgttgtgagtcaacttctgaactcaccttgtgatagccattggaatgtcgtggt 8984557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 40543374 - 40543321
Alignment:
Q  8 aggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagg 61  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || ||||||||    
T  40543374 aggcattgctatctctcagagaaaatatgcccttgatattttagaggagacagg 40543321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 7928721 - 7928773
Alignment:
Q  8 aggcattgctatttctcagagaaaatacgttcttgatattttggaagagacag 60  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || |||||||    
T  7928721 aggcattgctatctctcagagaaaatatgcccttgatattttagaggagacag 7928773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 32331759 - 32331489
Alignment:
Q  6 gaaggcattgctatttctcagagaaaatacgttcttgatattttggaagagacagggatgcttgattgtaaaccagttaatactcctat-gaaccttaat 104  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||| |||||||| |||| ||||||| ||| |||||| ||||| | || |||||| |||    
T  32331759 gaagacattgctatttctcagagaaaatatgttcttgatatcttgaaagagacatggattcttgattctaatccagttgatacttccatagaacct-aat 32331661  T
Q  105 gtgaggcttttacagaatcaaggagatttgtatcctgaccaaggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagata 204  Q
    |||| |||| |||| |||||||||||    |||||| ||| ||| ||||| |  |||||||||||||| | |||||||||||||||||| |||||  |||    
T  32331660 gtgaagcttctacataatcaaggagagccatatcctaacctaggcagatagatgaggttagttgggaaaccgaattatcttactatgaccagaccgtata 32331561  T
Q  205 tttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttc 276  Q
    ||||||||  |||| | ||||||| || |||| | |||||||||||||||||  ||||||||||||||||||    
T  32331560 tttcgttttctgttggtgttgtgaatctatttataaactcaccttgtgatagtaattggaatgtcgtggttc 32331489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 30592377 - 30592248
Alignment:
Q  146 aggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaatttttgaactca 245  Q
    |||||| ||| | |||||||||||||||||||||||| | || ||||| ||||| |||||||| | ||  || || ||||| |||||||| ||||| ||     
T  30592377 aggaaggtaccggaggttagttgggaagctgaattatttgaccatgacaagacctgatatttcatatgcagtcagtgttgttagtcaattcttgaattcc 30592278  T
Q  246 ccttgtgatagccattggaatgtcgtggtt 275  Q
    ||||||||||  ||||||| ||| ||||||    
T  30592277 ccttgtgatattcattggattgttgtggtt 30592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 35001007 - 35000930
Alignment:
Q  228 agtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcagatcttgaggtatattaaagggtcgcct 305  Q
    ||||||||| | ||||||||||||||| || |||||||||  || |||||||||| |||||||| |||||||||||||    
T  35001007 agtcaatttcttaactcaccttgtgatggcaattggaatgaagtagttcagatctagaggtatactaaagggtcgcct 35000930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 53990153 - 53990262
Alignment:
Q  146 aggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaatttttgaactca 245  Q
    |||||| ||| | |||||||||||||||||||||||| | || ||||| ||||| |||||||| | ||  || || ||||| |||||||| ||||| ||     
T  53990153 aggaaggtaccggaggttagttgggaagctgaattatttgaccatgacaagacctgatatttcatatgcagtcagtgttgttagtcaattcttgaattcc 53990252  T
Q  246 ccttgtgata 255  Q
    ||||||||||    
T  53990253 ccttgtgata 53990262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 9187649 - 9187735
Alignment:
Q  177 aattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaatttttgaactcaccttgtgatagccattgg 263  Q
    |||||||||||  | |||||||| |||||| | |||||||| ||| |||||| ||||||| | ||| | ||||||||||| ||||||    
T  9187649 aattatcttacagtcactagacctgatattacctttgttgtcagcattgtgaatcaatttctaaacgctccttgtgatagtcattgg 9187735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 17726411 - 17726520
Alignment:
Q  146 aggaagatacagaaggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgttgttagcgttgtgagtcaatttttgaactca 245  Q
    |||||| ||| | |||||||||||||||||||||||| | || ||||| ||||| |||||||| | ||  || || ||||| |||||||| ||||| ||     
T  17726411 aggaaggtaccggaggttagttgggaagctgaattatttgaccatgacaagacctgatatttcatatgcagtcagtgttgttagtcaattcttgaattcc 17726510  T
Q  246 ccttgtgata 255  Q
    ||||||||||    
T  17726511 ccttgtgata 17726520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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