View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_11 (Length: 291)
Name: NF18287_low_11
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 47821962 - 47821700
Alignment:
| Q |
1 |
taatgatatgtattggtgtcagtatcacggaacccggctttgatctaaagtgttggtactcagatattgtaggcacgtagttaagatacataagatacat |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47821962 |
taatgatatgtattggtgtcagtgtcacggaatccgcctttgatctaaagtgttggtactcagatattgtaggcacgtagttaagatacat--------- |
47821872 |
T |
|
| Q |
101 |
tataaagatacattcataataccagattcttgatcaagtttcaagcttctagtctttccatcatcagatgtgtttacatggttgggtgaccatatcacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47821871 |
tataaagatacattcataataccagattcttgatcaagtttcaagcttctcgtctttccatcatcagatgtgtttacatggttgggtgaccatatcacaa |
47821772 |
T |
|
| Q |
201 |
agaagtccttattgaagtcacctgttgaaacaatagaagctattgaaatatgaaacaaacttgaggagacaa |
272 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47821771 |
agaaatccttattgaagtcacctgttgaaacaatagaagctattgaaatatgaaacaaacttgaggagacaa |
47821700 |
T |
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