View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18287_low_15 (Length: 232)
Name: NF18287_low_15
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2516494 - 2516286
Alignment:
| Q |
1 |
agcgcatttgctttatttttgnnnnnnncgctctcaaatttcaaatttcacttcaacgttcgtttctttttcttcacaacacaacactccaaaccctaac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
2516494 |
agcgcatttgctttatttttgaaaaaaacgctctcaaatttcaaatttcacttcaacgttcgtttctt---cttcacaatacaacaatccaaaccctaac |
2516398 |
T |
|
| Q |
101 |
annnnnnncccaaacgcgatttcccaaaatcgattcctaacataatccattctacgaagcacttcatgtcttcccggaaccagaatcgggcaccaagccc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516397 |
atttt---cccaaacgcgatttcccaaaatcgattcctaacataatccattctacgaagcacttcatgtcttcccggaaccagaatcgggcaccaagccc |
2516301 |
T |
|
| Q |
201 |
ctccaacgtatgaat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2516300 |
ctccaacgtatgaat |
2516286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University