View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_16 (Length: 228)
Name: NF18287_low_16
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 47880025 - 47879858
Alignment:
| Q |
1 |
atataggtcagttgaaattattggctgaaactcaactgaaacaacgaataagaaatgtagtgtttacagttccagtttccttcagttgatctcagctaat |
100 |
Q |
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| T |
47880025 |
atattggtcagttgaaattattggctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttcagttgacctcagctaat |
47879926 |
T |
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| Q |
101 |
ccgaactcatcgcacttgtgcgatgtccaatcttcatgttctcaggctgatgtatcaactaactgcag |
168 |
Q |
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| T |
47879925 |
ccgaactcatcgcacttgtgcgatgtccaatcttcatgttctcaggctgatgtatcaactaactgcag |
47879858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 44728393 - 44728329
Alignment:
| Q |
22 |
tggctgaaactcaactgaaacaacgaataagaaatgtagtgtttacagttccagtttccttcagt |
86 |
Q |
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| T |
44728393 |
tggctgaaactgaactgaaacaacctataagaaatgtagtgtttattattccagtttcgttcagt |
44728329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 39241337 - 39241398
Alignment:
| Q |
25 |
ctgaaactcaactgaaacaacgaataagaaatgtagtgtttacagttccagtttccttcagt |
86 |
Q |
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|||||||||| ||||||| || |||||||||||| ||| |||||||||||||||| |||||| |
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| T |
39241337 |
ctgaaactcatctgaaacgaccaataagaaatgttgtgcttacagttccagtttcattcagt |
39241398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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