View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_low_19 (Length: 203)

Name: NF18287_low_19
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_low_19
NF18287_low_19
[»] chr4 (6 HSPs)
chr4 (1-189)||(33833745-33833933)
chr4 (1-189)||(37917826-37918014)
chr4 (1-56)||(22503604-22503659)
chr4 (1-56)||(46594711-46594766)
chr4 (1-56)||(37076093-37076148)
chr4 (1-56)||(50961789-50961844)
[»] chr1 (3 HSPs)
chr1 (1-189)||(18419547-18419735)
chr1 (1-189)||(52963094-52963282)
chr1 (31-111)||(19937868-19937948)
[»] chr8 (3 HSPs)
chr8 (1-130)||(36999843-36999971)
chr8 (1-56)||(43736032-43736087)
chr8 (159-189)||(36999810-36999840)
[»] chr7 (6 HSPs)
chr7 (1-92)||(44264294-44264385)
chr7 (1-92)||(7928287-7928378)
chr7 (1-56)||(40543717-40543772)
chr7 (1-56)||(42358250-42358305)
chr7 (1-56)||(45183404-45183459)
chr7 (1-42)||(6999845-6999886)
[»] chr5 (2 HSPs)
chr5 (1-83)||(21285632-21285714)
chr5 (1-56)||(20539-20594)
[»] chr2 (2 HSPs)
chr2 (1-56)||(34769254-34769309)
chr2 (1-56)||(38505348-38505403)
[»] chr3 (1 HSPs)
chr3 (1-56)||(36499831-36499886)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 33833933 - 33833745
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33833933 tgctccatataaatctcctcttctaagtcaccatgcaagaaagcatttttaatatcaagttgatacaaaggccaatggttcatagcagccattgacaaga 33833834  T
Q  101 aaagacgaacaaaagccatttttgcaactggagaaaaagtatcactgtagttaaacccataaatttgagtgtatccttttgctactaat 189  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  33833833 aaagacgaacagaagccatttttgcaactggagaaaaagtatcactgtagtcaagcccataaatttgagtgtatccttttgctactaat 33833745  T

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Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 37917826 - 37918014
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  37917826 tgctccatataaatctcctcttctaagtcaccatgcaagaaagcatttttaatatcaagttgatacataggccaatggttcatagcagccattgacaaga 37917925  T
Q  101 aaagacgaacaaaagccatttttgcaactggagaaaaagtatcactgtagttaaacccataaatttgagtgtatccttttgctactaat 189  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  37917926 aaagacgaacagaagccatttttgcaactggagaaaaagtatcactgtagtcaagcccataaatttgagtgtatccttttgctactaat 37918014  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22503604 - 22503659
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| ||||||| |||||    
T  22503604 tgctcaatataaatctcttcttccaagtcaccatgcaagaaagcatttttgatatc 22503659  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46594711 - 46594766
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  46594711 tgctccatataaatctcttcttccaagtcaccatgcaagaaatcattcttgatatc 46594766  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37076148 - 37076093
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| ||||||||||||| |||| |||| || |||||    
T  37076148 tgctccatataaatctcttcttccaagtcaccatgcaggaaatcattcttgatatc 37076093  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50961844 - 50961789
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| | |||||||||||||||| |||| || |||||    
T  50961844 tgctccatataaatctcttcttccaggtcaccatgcaagaaagcattcttgatatc 50961789  T

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Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18419547 - 18419735
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 100  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18419547 tgctccatataaacctctttttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 18419646  T
Q  101 aaagacgaacaaaagccatttttgcaactggagaaaaagtatcactgtagttaaacccataaatttgagtgtatccttttgctactaat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18419647 aaagacgaacaaaagccatttttgcaactggagaaaaagtatcactgtagtcaagcccataaatttgagtgtatccttttgctactaat 18419735  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 52963282 - 52963094
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 100  Q
    ||||||||||||||||| |||| |||||||||||||| |||  |||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||    
T  52963282 tgctccatataaatctcatcttgtaagtcaccatgcatgaatgcatttttaatattaagttgatacaaaggccaatgtttcacaacaaccattgacaaga 52963183  T
Q  101 aaagacgaacaaaagccatttttgcaactggagaaaaagtatcactgtagttaaacccataaatttgagtgtatccttttgctactaat 189  Q
    ||||||||||||| |||||||| |||||||||||||| || ||| |||||| ||  ||||||||||||||||||| |||||||||||||    
T  52963182 aaagacgaacaaaggccattttagcaactggagaaaaggtgtcaatgtagtcaaggccataaatttgagtgtatctttttgctactaat 52963094  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 19937868 - 19937948
Alignment:
Q  31 ccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaagaaaagacgaaca 111  Q
    |||||||||||  ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||    
T  19937868 ccatgcaagaagtcatttttaatagcaagttgatacaaaggccgatgtttcatagcaaacatagacaagaaaagacgaaca 19937948  T

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Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36999971 - 36999843
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccattgacaaga 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  36999971 tgctccatataaatctcctcttccaagtcaccatgcaagaaagc-tttttaatatcaagttgatacaaaggccaatggttcatagaagccattgataaga 36999873  T
Q  101 aaagacgaacaaaagccatttttgcaactg 130  Q
    ||| ||||||||| ||||||||||||||||    
T  36999872 aaacacgaacaaatgccatttttgcaactg 36999843  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43736087 - 43736032
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  43736087 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 43736032  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 36999840 - 36999810
Alignment:
Q  159 ataaatttgagtgtatccttttgctactaat 189  Q
    |||||||||||||||||||||||||||||||    
T  36999840 ataaatttgagtgtatccttttgctactaat 36999810  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44264294 - 44264385
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccat 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||| || ||| | ||||||||| | ||||| ||| ||||    
T  44264294 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattttttatatccagctgaaataaaggccaacgtttcatggcagccat 44264385  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7928378 - 7928287
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcatagcaaccat 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || ||||| | |||| | ||||||||| | ||||| ||| ||||    
T  7928378 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatccaattgaaataaaggccaacgtttcatggcagccat 7928287  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40543717 - 40543772
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| || |||||    
T  40543717 tgctccatataaatctcttcttctaagtcaccatgcaagaaagcattcttgatatc 40543772  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42358250 - 42358305
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  42358250 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 42358305  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45183404 - 45183459
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  45183404 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 45183459  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6999886 - 6999845
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaa 42  Q
    ||||||||||||||||| ||||| || |||||||||||||||    
T  6999886 tgctccatataaatctcttcttccaactcaccatgcaagaaa 6999845  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21285714 - 21285632
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatcaagttgatacaaaggccaatggttcat 83  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || ||||| | |||| | ||||||||||| |||||    
T  21285714 tgctccatataaatctcttcttccaagtcaccatgcaagaaatcattcttgatatctaattgaaataaaggccaatgtttcat 21285632  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20594 - 20539
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| || |||||    
T  20594 tgctccatgtaaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 20539  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34769254 - 34769309
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  34769254 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 34769309  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38505403 - 38505348
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||| || |||||    
T  38505403 tgctccatataaatctcttcttccaagtcaccatgcaagaaagcattcttgatatc 38505348  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36499886 - 36499831
Alignment:
Q  1 tgctccatataaatctcctcttctaagtcaccatgcaagaaaacatttttaatatc 56  Q
    ||||||||||||||||| ||||| |||| ||||||||||||| |||| || |||||    
T  36499886 tgctccatataaatctcttcttccaagttaccatgcaagaaagcattcttgatatc 36499831  T

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