View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_2 (Length: 560)
Name: NF18287_low_2
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Original strand, 52987476 - 52988038
Alignment:
| Q |
12 |
atgaaggttaaaagtgtgattaggtctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaannnnnnnnnnnnnngacatcctta |
111 |
Q |
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| T |
52987476 |
atgaaggttaaaagtgtgattaggcttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttatttttttgacatcctta |
52987575 |
T |
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| Q |
112 |
gctccaatctnnnnnnnnnnnnnnnnggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgt |
211 |
Q |
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| T |
52987576 |
gctccaatctaaaaaaaaaaaaaaaaggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgt |
52987675 |
T |
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| Q |
212 |
atcaagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagttttcc--------------atatggtaaacattaatgtgc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
52987676 |
atcaagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagttttccatatttgttattccatatggtaaacattaatttgc |
52987775 |
T |
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| Q |
298 |
ataaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacaaaactaccagcccctgaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52987776 |
ataaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacgaaactaccagcccctgaa |
52987875 |
T |
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| Q |
398 |
tgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatgcaagcatgcataattgacgattcga |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52987876 |
tgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatgcaagcatgcataattgacgattcta |
52987975 |
T |
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| Q |
498 |
tcgattcctttgaatagccctcattcttgcaacatggactaacttccctctcatttggaccct |
560 |
Q |
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| T |
52987976 |
tcgattcctttgaatagccctcattcttgcaacatggactaacttccctctcatttggaccct |
52988038 |
T |
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