View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_low_3 (Length: 523)

Name: NF18287_low_3
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_low_3
NF18287_low_3
[»] chr5 (14 HSPs)
chr5 (16-321)||(8999128-8999433)
chr5 (417-513)||(25497540-25497636)
chr5 (415-513)||(542738-542836)
chr5 (416-513)||(18307282-18307379)
chr5 (443-513)||(35564316-35564386)
chr5 (418-513)||(11346037-11346133)
chr5 (449-511)||(42865754-42865816)
chr5 (438-513)||(8537215-8537291)
chr5 (416-499)||(20192381-20192464)
chr5 (438-513)||(3600387-3600462)
chr5 (415-511)||(19037416-19037516)
chr5 (420-511)||(7994-8088)
chr5 (473-513)||(1401388-1401428)
chr5 (415-511)||(30708930-30709030)
[»] chr2 (19 HSPs)
chr2 (415-511)||(41500184-41500280)
chr2 (437-513)||(24512216-24512292)
chr2 (443-513)||(2920464-2920534)
chr2 (415-513)||(43491136-43491234)
chr2 (425-513)||(39393074-39393162)
chr2 (433-513)||(2648162-2648242)
chr2 (450-513)||(40679545-40679608)
chr2 (415-507)||(10365746-10365838)
chr2 (449-513)||(29093779-29093840)
chr2 (444-513)||(34638196-34638262)
chr2 (461-513)||(16580559-16580611)
chr2 (445-513)||(26858170-26858238)
chr2 (415-511)||(17424159-17424259)
chr2 (415-511)||(43982226-43982326)
chr2 (449-511)||(28472148-28472214)
chr2 (415-464)||(82259-82308)
chr2 (415-511)||(3937798-3937898)
chr2 (415-464)||(3943189-3943238)
chr2 (415-464)||(43943716-43943765)
[»] chr7 (16 HSPs)
chr7 (416-511)||(30355189-30355284)
chr7 (449-513)||(21188374-21188438)
chr7 (438-513)||(46863292-46863367)
chr7 (419-513)||(36394886-36394980)
chr7 (444-513)||(41047833-41047902)
chr7 (438-510)||(28980123-28980195)
chr7 (418-513)||(42682024-42682119)
chr7 (419-513)||(40587692-40587786)
chr7 (444-513)||(28115480-28115549)
chr7 (433-513)||(17838695-17838776)
chr7 (449-513)||(34139932-34139996)
chr7 (442-509)||(43686859-43686926)
chr7 (460-513)||(48269713-48269766)
chr7 (454-513)||(45364168-45364227)
chr7 (415-511)||(9367670-9367770)
chr7 (475-511)||(48316259-48316295)
[»] chr4 (23 HSPs)
chr4 (415-513)||(44561278-44561376)
chr4 (415-513)||(56138279-56138377)
chr4 (415-513)||(958542-958640)
chr4 (419-509)||(1041966-1042056)
chr4 (449-513)||(34154376-34154440)
chr4 (449-513)||(34530743-34530807)
chr4 (449-513)||(39588127-39588191)
chr4 (449-513)||(51429277-51429341)
chr4 (449-513)||(56304911-56304975)
chr4 (449-511)||(6283417-6283479)
chr4 (438-513)||(42885499-42885576)
chr4 (419-511)||(28081489-28081582)
chr4 (415-495)||(29700268-29700348)
chr4 (415-511)||(21017951-21018050)
chr4 (449-510)||(243296-243357)
chr4 (438-499)||(4786296-4786357)
chr4 (415-511)||(6178056-6178156)
chr4 (415-511)||(49094111-49094211)
chr4 (415-511)||(55793947-55794047)
chr4 (415-506)||(41795307-41795402)
chr4 (470-506)||(11287557-11287593)
chr4 (415-464)||(15999796-15999845)
chr4 (415-463)||(55407791-55407839)
[»] chr3 (33 HSPs)
chr3 (415-513)||(34694382-34694480)
chr3 (415-511)||(41803025-41803121)
chr3 (415-513)||(43476219-43476317)
chr3 (425-511)||(51402348-51402434)
chr3 (415-513)||(55385164-55385262)
chr3 (417-513)||(13896824-13896920)
chr3 (443-513)||(51696522-51696592)
chr3 (446-511)||(55207613-55207678)
chr3 (433-513)||(52570514-52570594)
chr3 (447-513)||(43568925-43568991)
chr3 (431-513)||(49609426-49609508)
chr3 (420-513)||(41577107-41577200)
chr3 (449-513)||(19454299-19454363)
chr3 (415-513)||(4004750-4004849)
chr3 (446-513)||(45101796-45101863)
chr3 (419-513)||(36134354-36134449)
chr3 (451-513)||(7245155-7245217)
chr3 (415-513)||(49219739-49219837)
chr3 (415-513)||(34648150-34648250)
chr3 (460-509)||(41137780-41137829)
chr3 (443-513)||(2271260-2271331)
chr3 (449-502)||(24703374-24703427)
chr3 (463-513)||(2426559-2426609)
chr3 (415-511)||(2647648-2647745)
chr3 (416-510)||(46347672-46347766)
chr3 (415-511)||(34049107-34049207)
chr3 (415-511)||(54389822-54389922)
chr3 (437-509)||(20366241-20366313)
chr3 (415-511)||(49140793-49140893)
chr3 (475-506)||(18436766-18436797)
chr3 (473-506)||(20378724-20378757)
chr3 (415-464)||(34691652-34691701)
chr3 (415-464)||(48246439-48246488)
[»] chr1 (24 HSPs)
chr1 (437-513)||(29763167-29763243)
chr1 (443-513)||(42572705-42572775)
chr1 (449-513)||(27487614-27487678)
chr1 (417-513)||(13972091-13972187)
chr1 (449-513)||(14174859-14174923)
chr1 (449-511)||(49927451-49927513)
chr1 (444-513)||(6434804-6434873)
chr1 (460-513)||(26637204-26637257)
chr1 (449-513)||(44596896-44596960)
chr1 (443-499)||(49395658-49395714)
chr1 (451-513)||(49426750-49426813)
chr1 (443-513)||(29435028-29435097)
chr1 (415-511)||(19159650-19159750)
chr1 (460-513)||(51269010-51269063)
chr1 (461-509)||(4208454-4208502)
chr1 (449-513)||(13147557-13147621)
chr1 (434-513)||(29709259-29709338)
chr1 (460-513)||(36908642-36908699)
chr1 (475-513)||(41779766-41779804)
chr1 (470-506)||(24364680-24364716)
chr1 (449-513)||(35526983-35527051)
chr1 (419-464)||(1656086-1656131)
chr1 (415-472)||(13636111-13636168)
chr1 (463-511)||(44338216-44338264)
[»] chr8 (12 HSPs)
chr8 (433-513)||(18441389-18441469)
chr8 (416-509)||(26451508-26451601)
chr8 (433-513)||(41274637-41274717)
chr8 (443-511)||(41858073-41858141)
chr8 (449-513)||(3395927-3395991)
chr8 (449-513)||(22547504-22547568)
chr8 (415-511)||(42602487-42602583)
chr8 (416-511)||(15033095-15033192)
chr8 (454-513)||(24860448-24860507)
chr8 (449-499)||(38871834-38871884)
chr8 (449-511)||(37779713-37779773)
chr8 (443-511)||(485996-486068)
[»] chr6 (17 HSPs)
chr6 (415-513)||(12783905-12784003)
chr6 (449-513)||(29061331-29061395)
chr6 (446-513)||(13401544-13401611)
chr6 (451-513)||(29065791-29065853)
chr6 (451-513)||(29074804-29074866)
chr6 (451-513)||(29079568-29079630)
chr6 (451-513)||(29107377-29107439)
chr6 (418-511)||(30258263-30258358)
chr6 (449-513)||(32034340-32034404)
chr6 (415-511)||(6204854-6204954)
chr6 (415-511)||(11691821-11691921)
chr6 (469-506)||(26855976-26856013)
chr6 (469-513)||(17596764-17596808)
chr6 (415-472)||(22305135-22305192)
chr6 (416-464)||(11840247-11840295)
chr6 (416-464)||(13388705-13388753)
chr6 (477-513)||(34634281-34634317)
[»] scaffold0199 (1 HSPs)
scaffold0199 (415-513)||(12335-12434)
[»] scaffold0192 (1 HSPs)
scaffold0192 (443-513)||(18847-18917)
[»] scaffold0176 (1 HSPs)
scaffold0176 (449-513)||(857-921)
[»] scaffold0101 (1 HSPs)
scaffold0101 (415-505)||(36486-36580)
[»] scaffold0181 (1 HSPs)
scaffold0181 (469-503)||(21171-21205)
[»] scaffold0012 (1 HSPs)
scaffold0012 (416-464)||(232829-232877)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 8999128 - 8999433
Alignment:
Q  16 caatgagaaggtttaagtagtgattgaaaatgaagatgagttaggaattgtgaagatggtgaagatgaagaggaagaagtgatggggcgtgagaagaagg 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999128 caatgagaaggttgaagtagtgattgaaaatgaagatgagttaggaattgtgaagatggtgaagatgaagaggaagaagtgatggggcgtgagaagaagg 8999227  T
Q  116 ggttacggaaggggaaaaagttgcgagagtagattctggccattcatttggatgttgagctttactgggttttgagattgaaagatgatgaatcgccatg 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999228 ggttacggaagggaaaaaagttgcgagagtagattctggccattcatttggatgttgagctttactgggttttgagattgaaagatgatgaatcgccatg 8999327  T
Q  216 aatgaacatgttcatgctcggaatgatgatgcgcggcgcaaccattacggtgaattctttcaaaaccaaatttagctcgtttttaaccgtttgggtttaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999328 aatgaacatgttcatgctcggaatgatgatgcgcggcgcaaccattacggtgaattctttcaaaaccaaatttagctcgtttttaaccgtttgggtttaa 8999427  T
Q  316 tcctgc 321  Q
    ||||||    
T  8999428 tcctgc 8999433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 25497540 - 25497636
Alignment:
Q  417 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||| ||||| | |||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25497540 ggctgcagttaactgccgaggaaaatctcggtagttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctca 25497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 542836 - 542738
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||  |||| | |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  542836 ccggctgcagctaactgccgaggaaactctcggtagttaactgccgaggatcttctgctacaaatctggcagaagttctctcatccattattcatctca 542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 416 - 513
Target Start/End: Original strand, 18307282 - 18307379
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||| | ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18307282 cggctgtagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctca 18307379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 35564316 - 35564386
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  35564316 ctcggtagttaactgctgaggatcttctgctacaaatctggcataagctctctcatccattattcacctca 35564386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 11346037 - 11346133
Alignment:
Q  418 gctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    |||||| ||||| | |||| |||| |||||||||||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  11346037 gctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 11346133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 42865816 - 42865754
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42865816 agttaattgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 8537215 - 8537291
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| ||||| || ||||||||||||||||||||||    
T  8537215 aaaatctcggtagttaactgccgaggatgttctgctacaaatctgccagaatctcctctcatccattattcatctca 8537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 20192381 - 20192464
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatc 499  Q
    |||||||| ||||| | |||| ||||  ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  20192381 cggctgcagttaactgccgaggaaaacttcgatagttaaatgccgaggatcttctgctacaaatctggcagaagctctctcatc 20192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 3600387 - 3600462
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| |||| |||||||| || ||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||    
T  3600387 aaaacctcgatagttaacagccgaggatcttctgctacaaatctgacagaagttctttcatgcattattcatctca 3600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 19037516 - 19037416
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  19037516 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatc 19037417  T
Q  511 t 511  Q
    |    
T  19037416 t 19037416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 511
Target Start/End: Complemental strand, 8088 - 7994
Alignment:
Q  420 tgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttct--gctacaaatctggcagaagct-ctctcatccattattcatct 511  Q
    |||| ||||| | |||| ||||||||||||||||||| | |||||||| ||  |||||||||||||||||| || ||| ||||||||||||||||    
T  8088 tgcagttaactgccgaggaaaatctcggtagttaactaccgaggatctcctgcgctacaaatctggcagaatctcctcacatccattattcatct 7994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 1401428 - 1401388
Alignment:
Q  473 tacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  1401428 tacaaatctagcagaagctctctcatccattattcatctca 1401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 30708930 - 30709030
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc--tacaaa-tctggcagaagctc-tctcatccattattcatc 510  Q
    ||||||||| ||||| | ||||  ||| ||||| |||||||||| ||||||||| |||  |||||| |||||||||| ||| |||||||||||||| |||    
T  30708930 ccggctgcagttaactgccgagggaaacctcgggagttaactgccgaggatcttatgcgctacaaaatctggcagaatctcctctcatccattattgatc 30709029  T
Q  511 t 511  Q
    |    
T  30709030 t 30709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 41500280 - 41500184
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    ||||||||| ||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41500280 ccggctgcagttaactgccgagaaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 24512216 - 24512292
Alignment:
Q  437 aaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512216 aaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 24512292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 2920534 - 2920464
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2920534 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 2920464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 513
Target Start/End: Original strand, 43491136 - 43491234
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||| |||||| |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43491136 ccggctgcaattaactgtcgaggaaaaccttggtagttaactgccgagaatcttctgttataaatctggcagaagctctctcatccattattcatctca 43491234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 39393074 - 39393162
Alignment:
Q  425 ttaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  39393074 ttaactgtcgagaaaaacctcggtagttaactgtcgaggatcttctactacaaatctgatagaagctctctcatccattattcatctca 39393162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 2648162 - 2648242
Alignment:
Q  433 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| ||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2648162 cgaggaaaatctcggtagttaattgccgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctca 2648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 40679608 - 40679545
Alignment:
Q  450 gttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaacctctctcatccattattcatctca 40679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 507
Target Start/End: Complemental strand, 10365838 - 10365746
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattc 507  Q
    ||||||| | ||||| | |||| |||| || ||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  10365838 ccggctgtagttaactgccgaggaaaaccttggtagttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 29093840 - 29093779
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  29093840 agttaactgccgaggatcttctgctacaaatctggcagaagctctctca---attattcatctca 29093779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 34638196 - 34638262
Alignment:
Q  444 tcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||| ||  ||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  34638196 tcggtagttaattgtcgaggatcttctgctacaaatct---agaagctctctcatccattattcatctca 34638262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 16580559 - 16580611
Alignment:
Q  461 aggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  16580559 aggattttctgctacaaatctggcaaaagttctctcatccattattcatctca 16580611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 26858170 - 26858238
Alignment:
Q  445 cggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| ||||||||| |||||||||||||||||||| || |||||  ||||||||| |||||||||||||    
T  26858170 cggtggttaactgccgaggatcttctgctacaaatgtgacagaaattctctcatcaattattcatctca 26858238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 17424159 - 17424259
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || |||||||| |||||| |||    
T  17424159 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatcgattattgatc 17424258  T
Q  511 t 511  Q
    |    
T  17424259 t 17424259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 43982226 - 43982326
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  43982226 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 43982325  T
Q  511 t 511  Q
    |    
T  43982326 t 43982326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 28472148 - 28472214
Alignment:
Q  449 agttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatct 511  Q
    |||||||||||||||||||||||  |||| ||||||||||||| || ||||||||||||||||||||    
T  28472148 agttaactgctgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattcatct 28472214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 82308 - 82259
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||| ||||| |||||| |||| ||| ||||||||||||||||||    
T  82308 ccggctgcagttaactgtcgaggaaaacctccgtagttaactgctgagga 82259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 3937898 - 3937798
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc--tacaaa-tctggcagaagctc-tctcatccattattcatc 510  Q
    ||||||||| ||||| | ||||  ||| ||||| |||||||||| ||||| |||||||  |||||| |||||||||| ||| |||||||||||||| |||    
T  3937898 ccggctgcagttaactgccgaggtaaacctcggaagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 3937799  T
Q  511 t 511  Q
    |    
T  3937798 t 3937798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 3943238 - 3943189
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||| ||||| | ||||||||| |||||||||||||||| |||||    
T  3943238 ccggctgcagttaactgccgagaaaaacctcggtagttaactgccgagga 3943189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 43943716 - 43943765
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  43943716 ccggctgcagttaactgtcgaggaaaaactcggtagttaactgccgagga 43943765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 511
Target Start/End: Complemental strand, 30355284 - 30355189
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30355284 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 21188438 - 21188374
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188438 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 21188374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 438 - 513
Target Start/End: Complemental strand, 46863367 - 46863292
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46863367 aaaatctctgtagttaactgccgaagatcttctgctacaaatctggcagaagctctttcatccattattcatctca 46863292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 513
Target Start/End: Complemental strand, 36394980 - 36394886
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||  | |||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36394980 ctgcaattaagtgccgaggaaaacctcggtagttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccgttattaatctca 36394886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 41047833 - 41047902
Alignment:
Q  444 tcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  41047833 tcggtagttaactgccgaggatcttctgctacaaatctggaggaagctctctcatccattattcatctca 41047902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 28980195 - 28980123
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatc 510  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  28980195 aaaacctcggtagttaactgccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 42682024 - 42682119
Alignment:
Q  418 gctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||| ||||| | |||| |||| ||||||| |||||||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  42682024 gctgcagttaactgccgaggaaaacctcggtaattaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctca 42682119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 419 - 513
Target Start/End: Original strand, 40587692 - 40587786
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| ||||| |||||| |||| ||| |||||||||||| ||||||||| ||||| |||||||  |||||||||||||||||||||||||||||    
T  40587692 ctgcagttaactgtcgaggaaaacctcagtagttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctca 40587786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 444 - 513
Target Start/End: Complemental strand, 28115549 - 28115480
Alignment:
Q  444 tcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  28115549 tcggtagttaactgttgagggtcttctgctacaaatctagcataagctctctcatccattattcatctca 28115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 17838695 - 17838776
Alignment:
Q  433 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    |||| |||| |||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  17838695 cgaggaaaacctcgatagttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 17838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 34139932 - 34139996
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  34139932 agttaactgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctca 34139996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 442 - 509
Target Start/End: Complemental strand, 43686926 - 43686859
Alignment:
Q  442 tctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    |||| |||||||||||| ||| || |||||||||||||||| || |||||||||||||||||||||||    
T  43686926 tctcagtagttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 48269713 - 48269766
Alignment:
Q  460 gaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  48269713 gaggatcttctgctacaaatctgacaaaagttctctcatccattattcatctca 48269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 45364227 - 45364168
Alignment:
Q  454 actgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||    
T  45364227 actgccgaggatcttcggctacaaatctggtagaagctctcttatctattattcatctca 45364168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 9367770 - 9367670
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  9367770 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 9367671  T
Q  511 t 511  Q
    |    
T  9367670 t 9367670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 48316295 - 48316259
Alignment:
Q  475 caaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||||||||||||||||||||||||||| ||||    
T  48316295 caaatctggcagaagctctctcatccattattaatct 48316259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 44561376 - 44561278
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| |||||   |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44561376 ccggctgcagttaactaccgaggaaaatctcggtagttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctca 44561278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 415 - 513
Target Start/End: Original strand, 56138279 - 56138377
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56138279 ccggctgcagttaactgccgaggaaaacctcagtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 56138377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 958640 - 958542
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| |||| ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  958640 ccggttgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatccggcagaagctctctcatccattattcttctca 958542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 509
Target Start/End: Original strand, 1041966 - 1042056
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    ||||| ||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||    
T  1041966 ctgcagttaactgccgagaaaaatctcggtagttaactgccgaggatcttctactacaaatctggcataagctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 34154440 - 34154376
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34154440 agttaactgcagaggatcttctgctacaaatctggcagaagctctctcatctattattcatctca 34154376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 34530807 - 34530743
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34530807 agttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattcatctca 34530743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 39588127 - 39588191
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39588127 agttaactgccgaggatcttctgctacaaatatggcagaagctctctcatccattattcatctca 39588191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 51429341 - 51429277
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51429341 agttaactgtcgaggatcttctgctacaaatctggaagaagctctctcatccattattcatctca 51429277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 56304911 - 56304975
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  56304911 agttaattgccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctca 56304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 6283479 - 6283417
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  6283479 agttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 42885499 - 42885576
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaa--tctggcagaagctctctcatccattattcatctca 513  Q
    |||| ||||| |||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42885499 aaaacctcggcagttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctca 42885576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 511
Target Start/End: Original strand, 28081489 - 28081582
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatct 511  Q
    ||||| ||||| | |||| ||||||||| ||||||| ||  ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  28081489 ctgcagttaactgccgaggaaaatctcgttagttaagtgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatct 28081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 29700348 - 29700268
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctct 495  Q
    ||||||||| ||||| | |||| |||| |||||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  29700348 ccggctgcagttaactgccgaggaaaacctcggtagttaattgccgatgatcttctgctacaaatctggcagaagctctct 29700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 21018050 - 21017951
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttct--gctacaaatctggcagaagct-ctctcatccattattcatct 511  Q
    ||||||||||||||| | |||| |||| ||||| |||||||||| || ||||||||  |||||||||||||||||| || |||||||| |||||||||||    
T  21018050 ccggctgcaattaactgccgaggaaaacctcggcagttaactgccgatgatcttctgagctacaaatctggcagaatctcctctcatctattattcatct 21017951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 243357 - 243296
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatc 510  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  243357 agttaactgtcgaggatcttctgttacaaatctggcagaagctctctcactcattattcatc 243296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 499
Target Start/End: Complemental strand, 4786357 - 4786296
Alignment:
Q  438 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatc 499  Q
    |||| |||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  4786357 aaaacctcggttgttaactgccgatgatcttctgctacaaatctggtagaagctctctcatc 4786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 6178156 - 6178056
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  6178156 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatc 6178057  T
Q  511 t 511  Q
    |    
T  6178056 t 6178056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 49094111 - 49094211
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  49094111 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatc 49094210  T
Q  511 t 511  Q
    |    
T  49094211 t 49094211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 55793947 - 55794047
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| ||||| |||||||||| ||||||||||||  |||| ||||||||||||| || |||||||||||||||||||    
T  55793947 ccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattcatc 55794046  T
Q  511 t 511  Q
    |    
T  55794047 t 55794047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 506
Target Start/End: Complemental strand, 41795402 - 41795307
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattatt 506  Q
    ||||||||| ||||| | |||| |||| |||| ||||||||||| ||||||||||||  |||| ||||||||||||| || |||||||||||||||    
T  41795402 ccggctgcagttaactgccgaggaaaacctcgttagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattatt 41795307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 11287557 - 11287593
Alignment:
Q  470 tgctacaaatctggcagaagctctctcatccattatt 506  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11287557 tgctacaaatgtggcagaagctctctcatccattatt 11287593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 15999845 - 15999796
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||||||||| | |||| |||| |||||||||||||||| |||||    
T  15999845 ccggctgcaattaactgccgaggaaaacctcggtagttaactgccgagga 15999796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 55407839 - 55407791
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagg 463  Q
    ||||||||| ||||| | |||| ||||||||||||||||||||| ||||    
T  55407839 ccggctgcagttaactgccgaggaaaatctcggtagttaactgccgagg 55407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 34694480 - 34694382
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| | ||| | ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694480 ccggctgcagtaaactgccgagaaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 34694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 41803025 - 41803121
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41803025 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 513
Target Start/End: Original strand, 43476219 - 43476317
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  43476219 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctca 43476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 425 - 511
Target Start/End: Complemental strand, 51402434 - 51402348
Alignment:
Q  425 ttaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    ||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51402434 ttaactgtcgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 513
Target Start/End: Original strand, 55385164 - 55385262
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55385164 ccggctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctca 55385262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 13896920 - 13896824
Alignment:
Q  417 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||| ||||| |||||| |||| |||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  13896920 ggctgcagttaactgtcgaggaaaacctcggtagttaactgccgaagattttctactacaaatctggcagaagctctctcatccattattcatctca 13896824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 51696592 - 51696522
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51696592 ctcggtagttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctca 51696522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 55207678 - 55207613
Alignment:
Q  446 ggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55207678 ggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 52570594 - 52570514
Alignment:
Q  433 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  52570594 cgagaaaaacctcggtagttaactgccgaggatcttctactacaaatctggcagaaactctctcattcattattcatctca 52570514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 43568925 - 43568991
Alignment:
Q  447 gtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  43568925 gtagttaactgctgaggatcttctgttacaaatctgacagaagctctctcatccattattcatctca 43568991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 431 - 513
Target Start/End: Original strand, 49609426 - 49609508
Alignment:
Q  431 gtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||| || ||||||||||||||    
T  49609426 gtcgagaaaaacctcggtagttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctca 49609508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 420 - 513
Target Start/End: Original strand, 41577107 - 41577200
Alignment:
Q  420 tgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| ||||| ||||| |||||  |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  41577107 tgcagttaactgtcgacaaaaacttcggtagtaaactgccgaggatcttctgctacaaatcttgcagaagctctctcatccattatccatctca 41577200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 19454363 - 19454299
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19454363 agttaactgccgaggatcttctactacaaatctggcagaagctctctcatccattattcatctca 19454299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 4004849 - 4004750
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||| |||| ||||||| |||||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  4004849 ccggctgcagttaactgccgaggaaaacctcggtacttaactgccgaggatcttctgctacaaacctggcagaatctcctctcatccattattcatctca 4004750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 45101863 - 45101796
Alignment:
Q  446 ggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  45101863 ggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctca 45101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 513
Target Start/End: Original strand, 36134354 - 36134449
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    ||||| ||||| | |||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  36134354 ctgcagttaactgccgaggaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaatctcctcttatccattattcatctca 36134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 7245155 - 7245217
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7245155 ttaactgccgagtatcttctgctacaaatctgacagaagctctctcatccattattcatctca 7245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 49219837 - 49219739
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||| |||| || |||||||||||   |||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  49219837 ccggctgcagttaactgccgaggaaaaccttggtagttaactatcgaggatcttctgctacaaatttgacagaagctctcccatccattattcatctca 49219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 34648250 - 34648150
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaa--tctggcagaagctctctcatccattattcatctc 512  Q
    ||||||||| |||||   |||| |||| ||||| ||| || ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  34648250 ccggctgcagttaacgaccgaggaaaacctcggcagtaaattgctgaggatcttatgctacaaaattctggcagaagctctctcatccattattcatctc 34648151  T
Q  513 a 513  Q
    |    
T  34648150 a 34648150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 41137780 - 41137829
Alignment:
Q  460 gaggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41137780 gaggatcttctgctacaaatctggcagaagctctctcatccattattcat 41137829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 2271331 - 2271260
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  2271331 ctcgggagttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccataattcatctca 2271260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 24703427 - 24703374
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccat 502  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 2426559 - 2426609
Alignment:
Q  463 gatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  2426559 gatcttctgctataaatttggcagaagctctctcattcattattcatctca 2426609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 2647745 - 2647648
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctac-aaatctggcagaagct-ctctcatccattattcatct 511  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| || |||| |||||||||||||  | ||||||||||||||||||||    
T  2647745 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctgct-ctacaaaatctggcagaatttcctctcatccattattcatct 2647648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 510
Target Start/End: Complemental strand, 46347766 - 46347672
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatc 510  Q
    |||||||| ||||| | |||| |||| |||| || |||||||  || |||||||||||||||||| || |||| |||||||||||||| ||||||    
T  46347766 cggctgcagttaactgccgaggaaaacctcgataattaactgtcgaagatcttctgctacaaatcagggagaaactctctcatccattgttcatc 46347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 34049107 - 34049207
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  34049107 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 34049206  T
Q  511 t 511  Q
    |    
T  34049207 t 34049207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 54389822 - 54389922
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  54389822 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 54389921  T
Q  511 t 511  Q
    |    
T  54389922 t 54389922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 509
Target Start/End: Original strand, 20366241 - 20366313
Alignment:
Q  437 aaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    ||||| |||||||||||| ||  ||||||||||| ||||||||||  |||||||| |||||| ||||||||||    
T  20366241 aaaaacctcggtagttaattgtcgaggatcttctactacaaatctaccagaagctttctcattcattattcat 20366313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 49140893 - 49140793
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| ||| |||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  49140893 ccggctgcagttaactgccgaggaaaacctcagtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatc 49140794  T
Q  511 t 511  Q
    |    
T  49140793 t 49140793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 506
Target Start/End: Original strand, 18436766 - 18436797
Alignment:
Q  475 caaatctggcagaagctctctcatccattatt 506  Q
    ||||||||||||||||||||||||||||||||    
T  18436766 caaatctggcagaagctctctcatccattatt 18436797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Complemental strand, 20378757 - 20378724
Alignment:
Q  473 tacaaatctggcagaagctctctcatccattatt 506  Q
    |||||||||||||||| |||||||||||||||||    
T  20378757 tacaaatctggcagaaactctctcatccattatt 20378724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 34691652 - 34691701
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  34691652 ccggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 34691701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 48246439 - 48246488
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  48246439 ccggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 48246488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 437 - 513
Target Start/End: Complemental strand, 29763243 - 29763167
Alignment:
Q  437 aaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29763243 aaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 29763167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 42572775 - 42572705
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42572775 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 42572705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 27487678 - 27487614
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27487678 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 27487614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 13972091 - 13972187
Alignment:
Q  417 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||| ||||| | |||| |||| ||||||| | ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13972091 ggctgcagttaacagccgaggaaaacctcggtattaaacagccgaggatcttctgctacaaatctggcagaagctctctcatctattattcatctca 13972187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 14174923 - 14174859
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14174923 agttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctca 14174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 49927513 - 49927451
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 6434804 - 6434873
Alignment:
Q  444 tcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  6434804 tcggtagttaactgccaaggatcttctgctacaaatctggtagaagcactctcatccattattcatctca 6434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 26637257 - 26637204
Alignment:
Q  460 gaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26637257 gaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 26637204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 44596896 - 44596960
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  44596896 agttaactgctgagtatcttctgctacaaatttggcagaaactctctcatccattattcatctca 44596960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 49395658 - 49395714
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatc 499  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49395658 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 49426750 - 49426813
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  49426750 ttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 49426813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 29435028 - 29435097
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||| |||||| || |||||||||| ||||||||| |||||||||||||||||||||||    
T  29435028 ctcggtagttaactgcagaggatttt-tgctacaaatttggcagaagttctctcatccattattcatctca 29435097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 19159650 - 19159750
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttct--gctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | | || |||| |||||||||||||||| |||||||||||  ||||| ||||||||||||| || |||||||||||||||||||    
T  19159650 ccggctgcagttaactgccaaggaaaacctcggtagttaactgccgaggatcttctgcgctacaaaatctggcagaatctcctctcatccattattcatc 19159749  T
Q  511 t 511  Q
    |    
T  19159750 t 19159750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 51269010 - 51269063
Alignment:
Q  460 gaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  51269010 gaggatcttctgctacaaatttagcagaagctctctcattcattattcatctca 51269063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 4208454 - 4208502
Alignment:
Q  461 aggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4208454 aggatcttctgctacaaatctaccagaagctctctcatccattattcat 4208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 13147557 - 13147621
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||  || ||||||||||||||||||||| | || ||||||||||||||||||||||||    
T  13147557 agttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctca 13147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 29709338 - 29709259
Alignment:
Q  434 gagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||||  ||||||||||   | |||||| ||||| |||||| ||||||||||| |||||||||||||||||||    
T  29709338 gagaaaaatctcaatagttaactgtcaaagatcttttgctataaatctagcagaagctctttcatccattattcatctca 29709259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 36908642 - 36908699
Alignment:
Q  460 gaggatcttctgctacaaatctggcagaagctctc----tcatccattattcatctca 513  Q
    ||||| |||||||||||||||||||||||||||||    |||||||||||||||||||    
T  36908642 gaggagcttctgctacaaatctggcagaagctctctcattcatccattattcatctca 36908699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 41779766 - 41779804
Alignment:
Q  475 caaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  41779766 caaatctagcagaagctctctcatccattattcatctca 41779804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 24364716 - 24364680
Alignment:
Q  470 tgctacaaatctggcagaagctctctcatccattatt 506  Q
    ||||||||||||||||||||||||| |||||||||||    
T  24364716 tgctacaaatctggcagaagctctcacatccattatt 24364680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 35527051 - 35526983
Alignment:
Q  449 agttaactgctgaggatcttctgctac--aaatctggcagaagctc--tctcatccattattcatctca 513  Q
    |||||||||  ||||||||||||||||  |||| |||||||| |||  |||||||||||||||||||||    
T  35527051 agttaactgtagaggatcttctgctacaaaaatatggcagaacctctatctcatccattattcatctca 35526983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 1656131 - 1656086
Alignment:
Q  419 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    ||||| ||||| ||||||||||| |||||||||||||||| |||||    
T  1656131 ctgcagttaactgtcgagaaaaacctcggtagttaactgccgagga 1656086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 13636168 - 13636111
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 472  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| ||||    
T  13636168 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctcctgc 13636111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 44338264 - 44338216
Alignment:
Q  463 gatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||||||||||||||  || ||| ||||||||| |||||||||||    
T  44338264 gatcttctgctacaaatctatcataagttctctcatctattattcatct 44338216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 18441469 - 18441389
Alignment:
Q  433 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18441469 cgagaaaaacctcggcagttaactgccgaggatcttctgctacaaatctggcagaaactctctcatccattattcatctca 18441389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 416 - 509
Target Start/End: Original strand, 26451508 - 26451601
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 509  Q
    |||||| | ||||| | |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26451508 cggctgtagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 41274637 - 41274717
Alignment:
Q  433 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  41274637 cgaggaaaatctcggtagttaactgccgagaatcttctactataaatctggcagaagctctctcatccattattcatctca 41274717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 41858141 - 41858073
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41858141 ctcgggagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 3395927 - 3395991
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  3395927 agttaactgccgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctca 3395991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 22547504 - 22547568
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  22547504 agttaactaccgaggatcttctactacaaatctggcagaagctctctcatcaattattcatctca 22547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 42602487 - 42602583
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||| |||| ||||| | |||| |||| |||||||||||||||| |||||||||||| |||||||||| || ||| | |||||||||||||||||||    
T  42602487 ccggatgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgatacaaatctgacataagttgtctcatccattattcatct 42602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 416 - 511
Target Start/End: Complemental strand, 15033192 - 15033095
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctacaaatctggcagaagct-ctctcatccattattcatct 511  Q
    |||||||||||||| | ||||  ||| |||||||||||||||| ||||||| ||||  ||||||||||||||||| || ||||||||||||||||||||    
T  15033192 cggctgcaattaactgccgagggaaacctcggtagttaactgccgaggatc-tctgacctacaaatctggcagaatctcctctcatccattattcatct 15033095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Original strand, 24860448 - 24860507
Alignment:
Q  454 actgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||| |||||||||||||    
T  24860448 actgcggaggatcttctgctataaatttgacagaagctctctcatctattattcatctca 24860507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 499
Target Start/End: Original strand, 38871834 - 38871884
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatc 499  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  38871834 agttaactgccaaggatcttctgctacaaatctggcaggagctctctcatc 38871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 37779713 - 37779773
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 511  Q
    |||||||||  |||||| |||||||||||||||| ||||||  ||||||||||||||||||||    
T  37779713 agttaactgtcgaggatattctgctacaaatctgacagaag--ctctcatccattattcatct 37779773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 486068 - 485996
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatct 511  Q
    |||||||||||||||| ||||| ||||||  |||| ||||||||||||| || ||||||||||||||| ||||    
T  486068 ctcggtagttaactgccgaggaacttctgcactacaaaatctggcagaatctcctctcatccattattgatct 485996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 12784003 - 12783905
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||| ||| | |||||| |||| ||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12784003 ccggctgcagttagctgtcgaggaaaacctcagtagttaactgccgaggatcttctgctacaaatctggaaaaagctctctcatccattattcatctca 12783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 29061331 - 29061395
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29061331 agttaacttccgaggatcttctgctacaaatctggtagaagctctctcatccattattcatctca 29061395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 13401544 - 13401611
Alignment:
Q  446 ggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    ||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  13401544 ggtagttaactaccgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctca 13401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 29065791 - 29065853
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29065791 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29065853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 29074804 - 29074866
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29074804 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29074866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 29079568 - 29079630
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29079568 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29079630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 29107377 - 29107439
Alignment:
Q  451 ttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29107377 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29107439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 511
Target Start/End: Complemental strand, 30258358 - 30258263
Alignment:
Q  418 gctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctac--aaatctggcagaagctctctcatccattattcatct 511  Q
    |||||| ||||| |||||| |||||||||| |||||||||| ||  |||||| |||||  |||||||  |||||||||||||||||||||||||||    
T  30258358 gctgcagttaactgtcgaggaaaatctcggcagttaactgccgataatcttcagctacgaaaatctgagagaagctctctcatccattattcatct 30258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 32034404 - 32034340
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  32034404 agttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctca 32034340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 6204854 - 6204954
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  6204854 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatc 6204953  T
Q  511 t 511  Q
    |    
T  6204954 t 6204954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 11691821 - 11691921
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattattcatc 510  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||  |||| ||||||||||||| || ||||||||||||||| |||    
T  11691821 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatc 11691920  T
Q  511 t 511  Q
    |    
T  11691921 t 11691921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 26855976 - 26856013
Alignment:
Q  469 ctgctacaaatctggcagaagctctctcatccattatt 506  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26855976 ctgctacaaatctggcagaagctctctcatccattatt 26856013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 17596808 - 17596764
Alignment:
Q  469 ctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  17596808 ctgctataaatctggcagaagctatctcatccattattcatctca 17596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 22305135 - 22305192
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 472  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| ||||    
T  22305135 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctcctgc 22305192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 11840295 - 11840247
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    |||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  11840295 cggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 11840247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 13388753 - 13388705
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    |||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  13388753 cggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 13388705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 34634281 - 34634317
Alignment:
Q  477 aatctggcagaagctctctcatccattattcatctca 513  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  34634281 aatctagcagaagctctctcatccattatttatctca 34634317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 12434 - 12335
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaagct-ctctcatccattattcatctca 513  Q
    ||||||||| ||||| | |||  |||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  12434 ccggctgcagttaactgccgatgaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctca 12335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 18917 - 18847
Alignment:
Q  443 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18917 ctcggtagttaactgtcgaggatcttctgctacaaatctggcagaagctttctcatccattattcatctca 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 857 - 921
Alignment:
Q  449 agttaactgctgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 513  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  857 agttaactgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctca 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 36580 - 36486
Alignment:
Q  415 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctac-aaatctggcagaagct-ctctcatccattat 505  Q
    ||||||||||||||| | |||| |||| |||||||||||||||| |||||||| |||  |||| ||||||||||||| || ||||||||||||||    
T  36580 ccggctgcaattaactgccgaggaaaacctcggtagttaactgccgaggatctcctgccctacaaaatctggcagaatctcctctcatccattat 36486  T

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Target: scaffold0181 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 21171 - 21205
Alignment:
Q  469 ctgctacaaatctggcagaagctctctcatccatt 503  Q
    ||||||||||||| |||||||||||||||||||||    
T  21171 ctgctacaaatcttgcagaagctctctcatccatt 21205  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 232877 - 232829
Alignment:
Q  416 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 464  Q
    |||||||||||||| | |||| |||| |||||||||||||||| |||||    
T  232877 cggctgcaattaactgccgaggaaaacctcggtagttaactgccgagga 232829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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