View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_5 (Length: 504)
Name: NF18287_low_5
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 43076357 - 43076843
Alignment:
| Q |
1 |
gacctatctatctatctctctgtaaatgattctctgattcagcttcagttaatatatggtcccacctgaataacataacttgtatataaaaccatgacac |
100 |
Q |
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| T |
43076357 |
gacctatctatctatctctctgtaaatgattctctgattcagcttcacttaatatatggtcccacctgaataacataacttgtatataaaaccatgacac |
43076456 |
T |
|
| Q |
101 |
aagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgtttgtaacattctttctttctaagaataatacttcaaacatgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076457 |
aagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgtttgtaacattctttctttctaagaataatacttcaaacatgaatt |
43076556 |
T |
|
| Q |
201 |
tcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatacaaagggacttcgaccaaaaccttctactggatttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076557 |
tcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatacaaagggacttcgaccaaaaccttctactggatttgg |
43076656 |
T |
|
| Q |
301 |
aatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076657 |
aatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagcc |
43076756 |
T |
|
| Q |
401 |
aaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgat |
487 |
Q |
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| T |
43076757 |
aaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgat |
43076843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 33966889 - 33966781
Alignment:
| Q |
333 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
432 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| | |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
33966790 |
T |
|
| Q |
433 |
cgtttataa |
441 |
Q |
| |
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|||| |||| |
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| T |
33966789 |
cgttgataa |
33966781 |
T |
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