View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_6 (Length: 499)
Name: NF18287_low_6
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 86 - 483
Target Start/End: Original strand, 39978969 - 39979366
Alignment:
| Q |
86 |
aaaggaagtccattgtttcctattccagaataaccaccagcaaatgtcatgaagttcttctggtccttcaaaccagcatcagttggtacatttcttgcac |
185 |
Q |
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| T |
39978969 |
aaaggaagtccattgtttcctattccagaataaccaccagcaaatgtcatgaagttcttctggtccttcaaaccagcatcagttggtacatttcttgcac |
39979068 |
T |
|
| Q |
186 |
ttgttgtagccacaacaagagcaagaaccaacaacaacatacaccacttcgccatatctctcccacttactaggaatatgtataataactgcactcactc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979069 |
ttgttgtagccacaacaagagcaagaaccaacaacaacatacaccacttcgccatatctctcccacttactaggaatatgtataataactgcactcactc |
39979168 |
T |
|
| Q |
286 |
tcgctctccctttgtgtcttaacctgagtacttgtgtggcaaagtgtgtttggggagtatctttttatagccaaaatactaagacctgataggtgaggag |
385 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979169 |
tcactctccctttgtgtcttaacctgagtacttgtgtggcaaagtgtgtttggggagtatctttttatagccaaaatactaagacctgataggtgaggag |
39979268 |
T |
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| Q |
386 |
gtagttgagcatggtaaatgaaatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactaccaaagacagtatatata |
483 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979269 |
gtagttgagcatggtaaatgatatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactaccaaagacagtatatata |
39979366 |
T |
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