View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_7 (Length: 421)
Name: NF18287_low_7
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 50075364 - 50074966
Alignment:
| Q |
10 |
agatgaagcacctagattagcaatcaacacgattgtttccttctcggagagtgtgggtaatgtaaacacgccaatcttcatgaagtaaatctttgaagta |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50075364 |
agatgaagcacctagattagcaatcaacacgattgtttccttctcggagagtgtgggtaatgtaaacacgccaatcttcatgaagtaaatctttgaagt- |
50075266 |
T |
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| Q |
110 |
gtcttcaatcaaagttgtaaacttgtgaaatctttatgtgtgatcacaaaggatattaacacaaagaagaaagtctgtgaagcaaaccacgccatgatct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50075265 |
--cttcaatcaaagttgtaaacttgtgaaatctttatgtgtgatcacaaaggatattaa-acaaagaagaaagtctgtgaagcaaaccacgccatgatct |
50075169 |
T |
|
| Q |
210 |
ttcaattgtttagccaaaagtaacccttgataaatgacatgaaacttggcatggagaatttcgaaggagcctaggaggagccccaagaaacctaatatcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50075168 |
ttcaattgtttagccaaaagtaacccttgataaatgacatgaaacttggcatggagaatttcgaaggagcctaggaggagccccaagaaacctaatatcc |
50075069 |
T |
|
| Q |
310 |
agatcccatatagttgatgaagcaaaccaccaaacccatctctagaggggttgtcaaggca----gctaccatcaatgttaagaataatagaaggttgat |
405 |
Q |
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| T |
50075068 |
agatcccatatagttgatgaagcaaaccaccaaacccatctctagaggggttgtcaaggcagctagctaccatcaatgttaagaataatagaagcttgat |
50074969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 50069342 - 50068947
Alignment:
| Q |
10 |
agatgaagcacctagattagcaatcaacacgattgtttccttctcggagagtgtgggtaatgtaaacacgccaatcttcatgaagtaaatctttgaagta |
109 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50069342 |
agatgaagcacctagattagcaatcagcacgattgtttccttctcaaagagtgtgggtaatgtaaacacgccaatcttcatgaagtaaatctttaaagt- |
50069244 |
T |
|
| Q |
110 |
gtcttcaatcaaagttgtaaacttgtgaaatctttatgtgtgatcacaaaggatattaacacaaagaagaaagtctgtgaagcaaaccacgccatgatct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50069243 |
--cttcaatcaaagttgtaaacttgtgaaatctttatgtgtgatcacaaaggatattaacacaaagaagaaagtctgtgaagcaaaccacgtcatgatct |
50069146 |
T |
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| Q |
210 |
ttcaattgtttagccaaaagtaacccttgataaatgacatgaaacttggcatggagaatttcgaaggagcctaggaggagccccaagaaacctaatatcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50069145 |
ttcaattgtttagccaaaagtaacccttgataaatgacatgaaatttggcatggagaatttcgaaggagcctaggaggagccccaagaagcctaatatcc |
50069046 |
T |
|
| Q |
310 |
agatcccatatagttgatgaagcaaaccaccaaacccatctctagaggggttgtcaaggcagctaccatcaatgttaagaataatagaaggttgatttt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50069045 |
agatcccatatagttgatgaagcaaaccaccaaacccatctctagagggattgccaaggcagctaccatcaatgttaagaataatagaagcttgatttt |
50068947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 8954297 - 8954235
Alignment:
| Q |
219 |
ttagccaaaagtaacccttgataaatgacatgaaacttggcatggagaatttcgaaggagcct |
281 |
Q |
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||||||||||||||||||||||||||| |||||||| | ||||| ||||| |||||||||| |
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| T |
8954297 |
ttagccaaaagtaacccttgataaatggcatgaaacacgccatggtaaattttgaaggagcct |
8954235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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