View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18287_low_8 (Length: 397)

Name: NF18287_low_8
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18287_low_8
NF18287_low_8
[»] chr5 (9 HSPs)
chr5 (18-390)||(41433697-41434067)
chr5 (196-385)||(41446419-41446616)
chr5 (18-147)||(41446652-41446781)
chr5 (74-143)||(36212964-36213033)
chr5 (74-145)||(31113402-31113473)
chr5 (74-145)||(5123500-5123571)
chr5 (93-140)||(14119193-14119240)
chr5 (63-145)||(18244641-18244723)
chr5 (109-145)||(2760309-2760345)
[»] chr6 (7 HSPs)
chr6 (74-146)||(21910273-21910344)
chr6 (71-134)||(278456-278519)
chr6 (74-144)||(21028845-21028913)
chr6 (74-144)||(21028982-21029050)
chr6 (102-137)||(27432259-27432294)
chr6 (74-136)||(29986816-29986878)
chr6 (74-146)||(28933206-28933278)
[»] chr4 (15 HSPs)
chr4 (62-146)||(16994146-16994230)
chr4 (74-145)||(35334100-35334171)
chr4 (72-145)||(33529323-33529396)
chr4 (76-135)||(53084963-53085022)
chr4 (74-136)||(8059037-8059099)
chr4 (74-145)||(2434627-2434698)
chr4 (102-137)||(18069264-18069299)
chr4 (74-145)||(31307068-31307139)
chr4 (74-145)||(38766157-38766228)
chr4 (74-136)||(3649057-3649119)
chr4 (88-146)||(13686684-13686742)
chr4 (74-136)||(17135164-17135226)
chr4 (74-146)||(7096164-7096236)
chr4 (77-145)||(9012341-9012409)
chr4 (102-146)||(45994618-45994662)
[»] chr2 (4 HSPs)
chr2 (73-145)||(17285739-17285811)
chr2 (70-145)||(17981562-17981636)
chr2 (74-146)||(5394464-5394536)
chr2 (110-146)||(26296463-26296499)
[»] chr3 (6 HSPs)
chr3 (61-140)||(25739142-25739221)
chr3 (74-146)||(25224767-25224839)
chr3 (74-146)||(38331196-38331268)
chr3 (74-145)||(30995967-30996038)
chr3 (102-137)||(38349811-38349846)
chr3 (57-145)||(40294663-40294751)
[»] chr8 (6 HSPs)
chr8 (57-146)||(36994501-36994590)
chr8 (90-143)||(13005682-13005735)
chr8 (74-145)||(4125026-4125097)
chr8 (74-145)||(7839255-7839326)
chr8 (74-145)||(13468747-13468818)
chr8 (97-145)||(24988590-24988638)
[»] chr7 (6 HSPs)
chr7 (101-145)||(1424668-1424712)
chr7 (74-145)||(31492171-31492242)
chr7 (74-135)||(4059705-4059766)
chr7 (74-118)||(44450775-44450819)
chr7 (74-135)||(7265325-7265386)
chr7 (116-148)||(24579453-24579485)
[»] chr1 (10 HSPs)
chr1 (77-145)||(15642526-15642594)
chr1 (74-137)||(24801449-24801512)
chr1 (101-145)||(49071672-49071716)
chr1 (63-146)||(22022177-22022260)
chr1 (74-145)||(32534151-32534221)
chr1 (57-136)||(40019292-40019370)
chr1 (102-137)||(40701585-40701620)
chr1 (95-145)||(9639559-9639609)
chr1 (63-137)||(42266820-42266894)
chr1 (57-145)||(7242809-7242897)
[»] scaffold0189 (1 HSPs)
scaffold0189 (74-143)||(11020-11089)
[»] scaffold0182 (1 HSPs)
scaffold0182 (74-145)||(26399-26470)
[»] scaffold0003 (1 HSPs)
scaffold0003 (102-137)||(55069-55104)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 41434067 - 41433697
Alignment:
Q  18 tcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaa 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434067 tcttctagctcaaccaaaaacccagattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaa 41433968  T
Q  118 gactcgagagattagtctccgcagttgcatatgatacttcatttacaccaaaaccttaattttcctgaaattgaatactcccttgacattttggtaatga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41433967 gactcgagagattagtctccgcagttgcatatgatacttcatttgcaccaaaaccttaattttcctgaaattgaatactcccttgacattttggtaatga 41433868  T
Q  218 taaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagctcctccacaactagtctgatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41433867 taaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagctcctccacaactagtctgatca 41433768  T
Q  318 tacatgggttggttgctaattc-gtgtttgcagtttttcttgttgttcactcatgttagatcttcttcttctca 390  Q
    |||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||||    
T  41433767 tacatgggttggttgctaattctgtgtttgcagtttttc---ttgtgcactcatgttagatcttcttcttctca 41433697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 196 - 385
Target Start/End: Complemental strand, 41446616 - 41446419
Alignment:
Q  196 tcccttgacattttggtaatgataaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagc 295  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||  |||    
T  41446616 tcccttgacattttggtaatgataaaatctggctatataattatatattcatcatttgcaattccatgtgcactctctagcaaatagtaaacccttgagc 41446517  T
Q  296 tcctccacaactagtctgatcat-------acatgggttggttgctaattc-gtgtttgcagtttttcttgttgttcactcatgttagatcttcttct 385  Q
    |||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  41446516 tcctccacaactagtctgatcatacatcatacatgggttggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttct 41446419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 41446781 - 41446652
Alignment:
Q  18 tcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  41446781 tcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacagagagtttaccgctcatttgggtcccacaa 41446682  T
Q  118 gactcgagagattagtctccgcagttgcat 147  Q
    |||||||||||||||||||||| |||||||    
T  41446681 gactcgagagattagtctccgctgttgcat 41446652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 36212964 - 36213033
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 143  Q
    ||||||||||||  |||||||| |||| ||||||||||||||||  |||||| |||| ||||||||||||    
T  36212964 ttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 31113402 - 31113473
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  |||||| ||||| | |||||||| ||||||| |||||||||||||||||||    
T  31113402 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 31113473  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 5123571 - 5123500
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  5123571 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 5123500  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 14119240 - 14119193
Alignment:
Q  93 tttaccgctcatttaggtcccacaagactcgagagattagtctccgca 140  Q
    ||||||||||||||||||| || ||| |||||| ||||||||||||||    
T  14119240 tttaccgctcatttaggtctcaaaaggctcgagggattagtctccgca 14119193  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 18244641 - 18244723
Alignment:
Q  63 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||| | |||||||||||||   |||| ||| || | ||||| ||| |||||| ||| |||||||||||||||||||||||    
T  18244641 atgcagcagcattaaaactctttgggagatttttccacccatttgggttccacaatacttgagagattagtctccgcagttgc 18244723  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 2760309 - 2760345
Alignment:
Q  109 gtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  2760309 gtcccacaagactcgagggattagtctctgcagttgc 2760345  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 21910273 - 21910344
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||||||||||| ||||||| | ||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  21910273 ttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgca 21910344  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 278456 - 278519
Alignment:
Q  71 acattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtc 134  Q
    |||||||||||||||  |||||||| |||  |||||||||||||||| |||| || ||||||||    
T  278456 acattaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtc 278519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 21028913 - 21028845
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttg 144  Q
    ||||||||||||  |||||||| |||| ||||| ||| ||||||| ||| || ||||||||||||||||||    
T  21028913 ttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 21029050 - 21028982
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttg 144  Q
    ||||||||||||  |||||||| |||| ||||| ||| ||||||| ||| || ||||||||||||||||||    
T  21029050 ttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 27432259 - 27432294
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27432259 catttaggtcccacaagactcgaaagattagtctcc 27432294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 29986816 - 29986878
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 136  Q
    |||||||||||   |||||||| ||||||||||  ||||||||| ||||||||||||| ||||    
T  29986816 ttaaaactctttaggagagtttgccgctcatttgagtcccacaaaactcgagagattaatctc 29986878  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 28933206 - 28933278
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||||| ||||| ||||||||| |||| ||||| ||| ||||||  |||||| || |||| ||||||||||||    
T  28933206 ttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgca 28933278  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 16994146 - 16994230
Alignment:
Q  62 tatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||| |||| |||||||||||| |  |||||||| | || ||||||||| |||||||||||||| ||||||||||||||||||||    
T  16994146 tatgtagtagcattaaaactctaaaggagagtttgctgcccatttaggttccacaagactcgagtgattagtctccgcagttgca 16994230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 35334171 - 35334100
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||||| |||||||   |||| ||||| |||||||||| ||||||| |||||||||||||||||||    
T  35334171 ttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgc 35334100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 33529323 - 33529396
Alignment:
Q  72 cattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||||  ||||| || |||| ||||| |||||||||| ||| ||| |||||||||||||||||||    
T  33529323 cattaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgc 33529396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 53085022 - 53084963
Alignment:
Q  76 aaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 135  Q
    ||||||||||  |||||||||||| | |||||||||| |||| |||||||||||||||||    
T  53085022 aaaactcttagggagagtttaccgtttatttaggtccgacaaaactcgagagattagtct 53084963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 8059099 - 8059037
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 136  Q
    |||||||||||| |||||||| ||| | ||||| |||||||||||||| ||| ||||||||||    
T  8059099 ttaaaactcttagagagagttgaccacccatttgggtcccacaagactggagtgattagtctc 8059037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 2434627 - 2434698
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||||||  | |||||  ||||||||||||||| ||||| |||||| |||| || |||||||||||    
T  2434627 ttaaaactcttacgaaaagtttgtcgctcatttaggtcctacaaggctcgagtgattggtatccgcagttgc 2434698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 18069299 - 18069264
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18069299 catttaggtcccacaagactcgaaagattagtctcc 18069264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 31307139 - 31307068
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  31307139 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 31307068  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 38766157 - 38766228
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||| | |||| ||||| |||| |||||  |||||| |||||||||||||||||||    
T  38766157 ttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgc 38766228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 3649119 - 3649057
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 136  Q
    ||||||||||||  |||||||| |||||||||| | || ||||||||||||  ||||||||||    
T  3649119 ttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtctc 3649057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 13686684 - 13686742
Alignment:
Q  88 gagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||||||| |||  ||||| |||| |||||| |||||||||||||||||| ||||||||    
T  13686684 gagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgca 13686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 17135164 - 17135226
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 136  Q
    ||||||||||||  |||||||| |||| |||||  |||||| |||||||||| ||||||||||    
T  17135164 ttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctc 17135226  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 7096164 - 7096236
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||||||||||  ||||| ||||||| ||||||||||  ||||  ||| |||||||||||| | ||||||||    
T  7096164 ttaaaactcttagggagagcttaccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgca 7096236  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 9012341 - 9012409
Alignment:
Q  77 aaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||  ||||| || |||| || || ||||||||||  |||||| |||||||||||||||||||    
T  9012341 aaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgc 9012409  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 45994618 - 45994662
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||| |||| |||||  |||||||||||||||||||||||||||    
T  45994618 catttgggtctcacaatgctcgagagattagtctccgcagttgca 45994662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 17285811 - 17285739
Alignment:
Q  73 attaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||| | ||  |||||||||| ||||||||    
T  17285811 attaaaattcttacagagagtttaccgctcatttagatcctacaagatttgatggattagtctctgcagttgc 17285739  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 17981562 - 17981636
Alignment:
Q  70 aacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||||||  ||||| || ||||  |||| ||||||||||  ||||||||||||||||||||||||||    
T  17981562 aacattaaaactcttagggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgc 17981636  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 5394464 - 5394536
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||| | ||||||||||||||||||||    
T  5394464 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgca 5394536  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 26296463 - 26296499
Alignment:
Q  110 tcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  26296463 tcccacaaggctcgagagattagtctccacagttgca 26296499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 25739142 - 25739221
Alignment:
Q  61 atatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgca 140  Q
    |||||||| | ||||||||||||||  |||||||| |||| ||||| ||||||| ||||||||| | |||||||||||||    
T  25739142 atatgcaggagcattaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgca 25739221  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 25224767 - 25224839
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||||||||||  ||||  || |||| ||||||||||||||||  ||| || ||||||||||||||||||||    
T  25224767 ttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgca 25224839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 38331196 - 38331268
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||||||||||| |||||| || |||| ||||| ||||||||||   | ||| ||||||||||||||||||||    
T  38331196 ttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgca 38331268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 30996038 - 30995967
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||| | |||| ||| | ||||||||||  |||||| |||||||||||||||||||    
T  30996038 ttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgc 30995967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 38349811 - 38349846
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38349811 catttaggtcccacaagactcgaaagattagtctcc 38349846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 40294663 - 40294751
Alignment:
Q  57 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||||  ||  ||||||||||||  || || || ||||||||||   |||||||| ||||||  |||||||||||||||||||    
T  40294663 ttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgc 40294751  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 36994590 - 36994501
Alignment:
Q  57 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    ||||| |||||| | | ||||||||||||  |||||||| | || ||||| ||||||||||| |||||| |||||||||| |||||||||    
T  36994590 ttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgca 36994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 13005735 - 13005682
Alignment:
Q  90 gagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 143  Q
    ||||||||||  ||||||||||||||||| ||| |||||| |||||||||||||    
T  13005735 gagtttaccgtccatttaggtcccacaaggctcaagagatcagtctccgcagtt 13005682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 4125097 - 4125026
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  4125097 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 4125026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 7839326 - 7839255
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 7839255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 13468818 - 13468747
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||||| ||||||| | |||| |||||  |||||||||  |||||  |||||||||||||||||||    
T  13468818 ttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgc 13468747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24988590 - 24988638
Alignment:
Q  97 ccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||  ||||||||| ||||||| |||||||||||||| ||||    
T  24988590 ccgctcatttgagtcccacaatactcgagggattagtctccgcaattgc 24988638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1424668 - 1424712
Alignment:
Q  101 tcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  1424668 tcatttgggtcccacaagacttgagagattagtctccgcagttgc 1424712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 31492171 - 31492242
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  31492171 ttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgc 31492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 4059766 - 4059705
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 135  Q
    |||||||||||| ||||||||| ||| | |||| |||| ||||||||||||| |||||||||    
T  4059766 ttaaaactcttagagagagttttccgtttatttgggtcacacaagactcgagggattagtct 4059705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 44450819 - 44450775
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaag 118  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||    
T  44450819 ttaaaaattttacagagagtttaccgttcatttaggtcccacaag 44450775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 7265386 - 7265325
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 135  Q
    ||||||||||||  |||||||| | |||||||| |||||||||| ||||||  |||||||||    
T  7265386 ttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 24579485 - 24579453
Alignment:
Q  116 aagactcgagagattagtctccgcagttgcata 148  Q
    ||||||||||||||||||||| |||||||||||    
T  24579485 aagactcgagagattagtctctgcagttgcata 24579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 15642526 - 15642594
Alignment:
Q  77 aaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||  |||||||| |||| ||||| ||||||||||  |||||||||||| |||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgc 15642594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 24801449 - 24801512
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||  ||||||||||||  |||||  |||||||||||||| ||||||||||||||    
T  24801449 ttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 49071672 - 49071716
Alignment:
Q  101 tcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  49071672 tcatttgggtcccacaatgctcgagagattagtctccgcagttgc 49071716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 22022177 - 22022260
Alignment:
Q  63 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 146  Q
    |||||| | ||||||||||||||  ||||  || || | ||||| |||||||||| | ||||| ||||||||||||||||||||    
T  22022177 atgcagcagcattaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgca 22022260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 32534151 - 32534221
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||||||||| |||||| ||||||| |||| ||||| |||||  |||||||| |||||||||||| ||||    
T  32534151 ttaaaactcttagagagagcttaccgcccatt-aggtctcacaatgctcgagaggttagtctccgcaattgc 32534221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 40019292 - 40019370
Alignment:
Q  57 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 136  Q
    |||||||||||| ||| |||||||||||   |||||||| |  |||||||| ||||||||| |||| |||||||||||||    
T  40019292 ttggatatgcagcaacgttaaaactcttggggagagtttgca-ctcatttaagtcccacaaaactcaagagattagtctc 40019370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 40701585 - 40701620
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40701585 catttaggtcccacaagactcgaaagattagtctcc 40701620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 9639609 - 9639559
Alignment:
Q  95 taccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    |||||| ||||| ||||| | ||||||||||||||||||||||||| ||||    
T  9639609 taccgcccatttgggtcctaaaagactcgagagattagtctccgcaattgc 9639559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 42266820 - 42266894
Alignment:
Q  63 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctcc 137  Q
    |||||| |||||||| || |||| |||||| || |||| ||||||  ||||||||||||| || |||||||||||    
T  42266820 atgcagcaacattaacacacttaaagagagcttgccgcccatttaaatcccacaagactcaagtgattagtctcc 42266894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 7242897 - 7242809
Alignment:
Q  57 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||| |||||| ||| ||||||||||||  |||||| |||| | |||||   || || || ||||||| |||||||||||||||||||    
T  7242897 ttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgc 7242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 11020 - 11089
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 143  Q
    ||||||||||||| |||||||| |||| |||||||||  ||||| |||||| |||||| ||||| |||||    
T  11020 ttaaaactcttacggagagtttgccgcccatttaggtttcacaaaactcgatagattaatctccacagtt 11089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 26399 - 26470
Alignment:
Q  74 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 145  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||   |||||||||||||||||||||||||    
T  26399 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgc 26470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 55104 - 55069
Alignment:
Q  102 catttaggtcccacaagactcgagagattagtctcc 137  Q
    ||||||||||||||||||||||| ||||||||||||    
T  55104 catttaggtcccacaagactcgaaagattagtctcc 55069  T

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