View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18287_low_9 (Length: 366)
Name: NF18287_low_9
Description: NF18287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18287_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 25818552 - 25818211
Alignment:
| Q |
7 |
gagaaaagaaagagatcgatgagatttgagaacaaatttatatgtataatgattgatgtaatgaaatagaggtataaaataaattaaaaaat-tcatatt |
105 |
Q |
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| T |
25818552 |
gagaaaagaaagagatcgatgagatttgagaacaaatttat--gtataatgattgatgtaacgaaatagaggtataaaataatttaaaaaaaatcgtttt |
25818455 |
T |
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| Q |
106 |
agtgtgaaatgcatgttatcgacaaaatattgtgctcctacactgaaaaacattttgacatataataatgttattgtaatgttaaggcagccaaattaat |
205 |
Q |
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| T |
25818454 |
agtgtgaaatgcatgttatcgacaaaatattgtgctcctacactgaaaaacattttgacatataataatgttattgtaatgttaaggcagccaaattaat |
25818355 |
T |
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| Q |
206 |
tggtcaagtgtttctagatttttgactcctcttcatcattttctatatatataatttcctcttcatttgaaaaaccataattgtgaggagattgagacaa |
305 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25818354 |
tggtcaatagtttctagatttt-gactcctcttcatcattttctatatatataatttcctcttcatttgaaaaaccataattgtgaggagattgggacaa |
25818256 |
T |
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| Q |
306 |
attaagagaaaagatatataatgatgacaaattctataaacatca |
350 |
Q |
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| T |
25818255 |
attaagagaaaagatatataatgatgacaaattctatgaacatca |
25818211 |
T |
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