View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18288_high_14 (Length: 215)
Name: NF18288_high_14
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 42003161 - 42003350
Alignment:
| Q |
17 |
caccgtttcggttaagtgattattacacttttgttaatttttcattcctaaattgtccttccaattcaaccgtaataaatttagtaccacctataagttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42003161 |
caccgtttcggttaagtgattattacacttttgttaatttttcattcctaaattgtccttccaattcaaccgtaataaatttagtaccacctataagttg |
42003260 |
T |
|
| Q |
117 |
tttgaatttaagctctattagtagtatcaacaacgataagaacatgaattattcgattgtggctatgatgtctgatcctccctttgctac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42003261 |
tttgaatttaagctctattagtagtatcaacaacgataagaacatgaattattcgattgtggctatgatgtctgatcctccttttgctac |
42003350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University