View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18288_low_1 (Length: 475)
Name: NF18288_low_1
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 8695513 - 8695052
Alignment:
| Q |
1 |
atcacaaaagttgcatattgttgggggagtccggagagagtctgatgaggcaacgagctaaacgtttaggaacactaagagatttcacgcatatcttcat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8695513 |
atcataaaagttgcatattgttgggggagtccggagagagtctgatgaggcaacgagctaaacgtttaggaacactaagagatttcacgcacatcttcat |
8695414 |
T |
|
| Q |
101 |
caaacatcttaaggtattaggtcagttacggatctagaaatttcgaaaagtgggggcactgtatatattaatttgaatcattaaatatatatttggaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
8695413 |
caaacatcttaaggtattaggtcagttacggatctagaaatttcgaaaaatggaggcactgtatatattaattcgaagcattaaatatatatttggaaac |
8695314 |
T |
|
| Q |
201 |
aaggttgtgttattgtgtcatgtgtgatgtaggtatgggctaagaaagaaatgacgtgttataagtgtgggccatttagtcaaaatgtaatcaactatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8695313 |
aaggttgtgttattgtgtcatgtgtgatgtaggtgtgggctaagaaagaaatgacatgttataagtgtggaccatttagtcaaaatgtaatcaactatta |
8695214 |
T |
|
| Q |
301 |
ctatattatactacttaaaaataagactattactttttacatcatctatctctatcacatcatctacttatcgcgcttattacatcactctctatttcta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8695213 |
ctatattatactacttaaaaataagactattactttttacatcatctatttctatcacatcatctacttatcgcgcttattacatcactctctatttcta |
8695114 |
T |
|
| Q |
401 |
tctttcttaacgttaaaacaaaagaatctctaaattttcagagaacttcacctctaccctcc |
462 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||| |
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|
| T |
8695113 |
tctttcttaacgttaaaacgaaagaatctctaaattttcacagaatttcacctctatcctcc |
8695052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 22487604 - 22487764
Alignment:
| Q |
162 |
tatatattaatttgaatcattaaatatatatttggaaacaagg-ttgtgttattgtgtcatgtgtgatgtaggtatgggctaagaaagaaatgacgtgtt |
260 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| || | || | ||||||||||| |||||| || || ||||| |||| |||||| |||||| |
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|
| T |
22487604 |
tatatattaattggaagcattaaatatatattcaaaaaaaaagattatattattgtgtcaattgtgatttaagtgtgggccaagagagaaatagcgtgtt |
22487703 |
T |
|
| Q |
261 |
ataagtgtgggccatttagtcaaaatgtaatcaactattactatattatactacttaaaaataa |
324 |
Q |
| |
|
|||||| | || |||| ||| |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22487704 |
ataagtataggttatttggtctaaat---atcaactattactatattatactacttcaaaataa |
22487764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 46695919 - 46695796
Alignment:
| Q |
197 |
aaacaaggttgtgttattgtgtcatgtgtgatgtaggtatgggctaagaaagaaatgacgtgttataagtgtgggccatttagtcaaaatgtaatcaact |
296 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| || || ||||| |||| |||||| ||||||||||||| || | || ||| ||||| |||||| |
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|
| T |
46695919 |
aaacaaggttgtgttgttgtgtcaagtgtgatttaagtgtgggccaagagagaaatattgtgttataagtgtaggtta-ttggtctaaatg---tcaact |
46695824 |
T |
|
| Q |
297 |
attactatattatactacttaaaaataa |
324 |
Q |
| |
|
||||||||||||| ||| ||||||||| |
|
|
| T |
46695823 |
attactatattattctatataaaaataa |
46695796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 324
Target Start/End: Complemental strand, 33511590 - 33511388
Alignment:
| Q |
123 |
cagttacggatctagaaatttcgaaaagtgggggcac----tgtatatattaatttgaatcattaaatatatatttggaaacaaggttgtgttattgtgt |
218 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| || | |||||||||||| ||| ||||||||||||||| |||||||||||||| || |||||| |
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|
| T |
33511590 |
cagtgacggatctagaaattttgaaaagtgggggtactatatatatatattaattggaagcattaaatatatattaggaaacaaggttgtattgttgtgt |
33511491 |
T |
|
| Q |
219 |
catgtgtgatgtaggtatgggctaagaaagaaatgacgtgttataagtgtgggccatttagtcaaaatgtaatcaactattactatattatactacttaa |
318 |
Q |
| |
|
|| ||||||| || || ||||| | || |||||| ||||||||||||| || |||| ||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
33511490 |
caagtgtgatttaagtgtgggccaggatagaaatattgtgttataagtgtaggttatttggtctaaatg---tcaactattactatattatattacttaa |
33511394 |
T |
|
| Q |
319 |
aaataa |
324 |
Q |
| |
|
|||||| |
|
|
| T |
33511393 |
aaataa |
33511388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 27818167 - 27818267
Alignment:
| Q |
128 |
acggatctagaaatttcgaaaagtgggggcactgtatatattaatttgaatcattaaatatatatttggaaacaaggttgtgttattgtgtcatgtgtga |
227 |
Q |
| |
|
||||||| | |||||| ||||||||| |||| ||||||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
27818167 |
acggatccataaattttgaaaagtggtagcaccatatatattaatcgaaagcattagatatatatttgaaaacaatgttgtgttgttgtgtcatgtgtga |
27818266 |
T |
|
| Q |
228 |
t |
228 |
Q |
| |
|
| |
|
|
| T |
27818267 |
t |
27818267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 324
Target Start/End: Original strand, 24638143 - 24638320
Alignment:
| Q |
146 |
aaaagtgggggcactgtatatattaatttgaatcattaaatatatatttgg--aaacaaggttgtgttattgtgtcatgtgtgatgtaggtatgggctaa |
243 |
Q |
| |
|
|||||||||||| || ||||||||| || || ||||||||||||||||| ||| |||||| | ||||||||||| |||| || || | ||||| || |
|
|
| T |
24638143 |
aaaagtgggggccctatatatattagttgaaagcattaaatatatatttgataaaaaaaggttatcttattgtgtcaggtgtaatttaaatgtgggccaa |
24638242 |
T |
|
| Q |
244 |
gaaagaaatgacgtgttataagtgtgggccatttagtcaaaatgtaatcaactattactatattatactacttaaaaataa |
324 |
Q |
| |
|
|| |||||| |||||| |||||| || |||| ||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638243 |
gagagaaatattgtgttacaagtgtaggttatttggtctaaat---atcaactattactatattatactacttaaaaataa |
24638320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 12586589 - 12586652
Alignment:
| Q |
130 |
ggatctagaaatttcgaaaagtgggggcactgtatatattaatttgaatcattaaatatatatt |
193 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
12586589 |
ggatccagaaattttgaaaaatgagggcactatatatattaattgaaatcattaaatatatatt |
12586652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 31645598 - 31645718
Alignment:
| Q |
145 |
gaaaagtgggggcactgtatatattaatttgaatcattaaatatatatttggaaacaaggttgtgttattgtgtcatgtgtgatgtaggtatgggctaag |
244 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||| ||||||| |||||||||||||| || |||||||| |||||| || || ||||| ||| |
|
|
| T |
31645598 |
gaaaagtgggggcactatatatattaattggaaacattaa--atatattaggaaacaaggttgtcttgttgtgtcaaatgtgatttaagtgtgggccaag |
31645695 |
T |
|
| Q |
245 |
aaagaaatgacgtgttataagtg |
267 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
31645696 |
agagaaatattgtgttataagtg |
31645718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 36230468 - 36230368
Alignment:
| Q |
221 |
tgtgtgatgtaggtatgggctaagaaagaaatgacgtgttataagtgtgggccatttagtcaaaatgtaatcaactattactatattatactacttaaaa |
320 |
Q |
| |
|
|||||||| || || ||||| |||| |||||| ||||||||||||| || |||| |||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
36230468 |
tgtgtgatataagtgtgggcgaagagagaaatattgtgttataagtgtaggttatttggtcaaaatgt---caactataactatattatactacttaaaa |
36230372 |
T |
|
| Q |
321 |
ataa |
324 |
Q |
| |
|
|||| |
|
|
| T |
36230371 |
ataa |
36230368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 31646312 - 31646341
Alignment:
| Q |
295 |
ctattactatattatactacttaaaaataa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31646312 |
ctattactatattatactacttaaaaataa |
31646341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 30282495 - 30282628
Alignment:
| Q |
188 |
tatatttggaaacaaggttgtgttattgtgtcatgtgtga---tgtaggtatgggctaagaaagaaatgacgtgttataagtgtgggccatttagtcaaa |
284 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| | | |||| ||| | |||| ||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
30282495 |
tatatttggaaacaagattgtgttgttgtgtcatgttatacaatacaggtgtggaccaagagagaaatgttgtgttataggtgtgggtcatttagtcaaa |
30282594 |
T |
|
| Q |
285 |
atgtaatcaactattactatattatactacttaaaaa |
321 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||| |
|
|
| T |
30282595 |
at---atcaactattaatatattatgttacttaaaaa |
30282628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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