View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18288_low_10 (Length: 280)
Name: NF18288_low_10
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_10 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold1826 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 24834657 - 24834391
Alignment:
| Q |
13 |
aatattttaagaaaacattttcactttctattatgaaaggtttcaaaa--attaactaaaaaataatgacttctaattattagcatgctttttatgttac |
110 |
Q |
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| T |
24834657 |
aatattttaagaaaacgttttcgctttctattatgaaaggttcaaaaataattaactaaaaaataatgacttctaattattagcatgctttttatgttac |
24834558 |
T |
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| Q |
111 |
ccatttacttagtgtattaaagggacaaacataacacattgatatacttaaa-gacattccttaagtgtggttaagggacaaacacaacacattgatatt |
209 |
Q |
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| T |
24834557 |
ccatttacttagtgtattaaagggacaaacaacacacatc----tacttaaaagacattccttaagtgtggtaaagggacaaacacaacacattgatctt |
24834462 |
T |
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| Q |
210 |
cttaaatgttacaaatattttataggttttagaaattcatgaacttttacactataaagtgcataaattat |
280 |
Q |
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| T |
24834461 |
cttaaatgtttcaaatattttataggttttagaaatgcatgaacttttacactataaagtgcataaattat |
24834391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 32581239 - 32581206
Alignment:
| Q |
128 |
taaagggacaaacataacacattgatatacttaa |
161 |
Q |
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| T |
32581239 |
taaagggacaaacacaacacattgatatacttaa |
32581206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 32965386 - 32965435
Alignment:
| Q |
115 |
ttacttagtgtattaaagggacaaacataacacattgatatacttaaaga |
164 |
Q |
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| T |
32965386 |
ttactgagtatactaaagggacaaacataataccttgatatacttaaaga |
32965435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 17225034 - 17224941
Alignment:
| Q |
68 |
aaaaaataatgacttctaattattagcatgctttttatgttacccatttacttagtgtattaaagggacaaacataacacattgatatacttaa |
161 |
Q |
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| T |
17225034 |
aaaaattaatgaattctaagtattaccaaggtttttaagtttcctctttagttagtatgttaaagggacaaatacaacacattgatctacttaa |
17224941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1826 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1826
Description:
Target: scaffold1826; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 381 - 341
Alignment:
| Q |
121 |
agtgtattaaagggacaaacataacacattgatatacttaa |
161 |
Q |
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| T |
381 |
agtgtactaaagggacaaaaataacacattgatatatttaa |
341 |
T |
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