View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18288_low_14 (Length: 241)

Name: NF18288_low_14
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18288_low_14
NF18288_low_14
[»] chr7 (9 HSPs)
chr7 (11-223)||(26207668-26207880)
chr7 (11-219)||(26227233-26227441)
chr7 (82-184)||(26260171-26260273)
chr7 (82-219)||(26191502-26191639)
chr7 (82-178)||(26242675-26242771)
chr7 (87-206)||(26204144-26204263)
chr7 (87-206)||(26223782-26223901)
chr7 (96-206)||(26179333-26179443)
chr7 (82-219)||(26297682-26297819)
[»] chr4 (1 HSPs)
chr4 (150-218)||(44903488-44903556)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 26207880 - 26207668
Alignment:
Q  11 cacagaatcatttggctttgaattaagccagttaagcaattccgactctactgcaaggtcttcattctgcacctttttaacccatgctgaaactggtcct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26207880 cacagaatcatttggctttgaattaagccagttaagcaattccgactctactgcaaggtcttcattctgcacctttttaacccatgctgaaactggtcct 26207781  T
Q  111 acgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcttagagttccatagcttcttccct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26207780 acgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcttagagttccatagcttcttccct 26207681  T
Q  211 ccgattcatgtac 223  Q
    |||||||||||||    
T  26207680 ccgattcatgtac 26207668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 26227441 - 26227233
Alignment:
Q  11 cacagaatcatttggctttgaattaagccagttaagcaattccgactctactgcaaggtcttcattctgcacctttttaacccatgctgaaactggtcct 110  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||| ||||||||| |||||||||||||||||||    
T  26227441 cacagaatcattcggctttgaattaagccagttaagcaattccgactctacaataacgtcttcattctgctcctttttaagccatgctgaaactggtcct 26227342  T
Q  111 acgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcttagagttccatagcttcttccct 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||    
T  26227341 acactccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcataaagttccataactttttccct 26227242  T
Q  211 ccgattcat 219  Q
    | |||||||    
T  26227241 ctgattcat 26227233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 26260273 - 26260171
Alignment:
Q  82 cctttttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagct 181  Q
    |||| |||| ||||| |||||||||||| || ||||||||||| |||  ||| |||||||||||||| | ||||||||||| |||||| || ||||||||    
T  26260273 ccttgttaatccatgttgaaactggtcccacactccatgctttaatcttcatggtgctcttgtaaagttgctcataatcactttcaagatcatgaaagct 26260174  T
Q  182 att 184  Q
    |||    
T  26260173 att 26260171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 26191639 - 26191502
Alignment:
Q  82 cctttttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagct 181  Q
    |||||||| |||| ||||||||||||||||| ||||| | |||||||||| ||||  | ||  |||| |||||||| |||| ||| ||||| ||||| ||    
T  26191639 cctttttagcccaagctgaaactggtcctacactccaagatttgatcccccttgtagtattacaaagtttctcatattcactttctagttcatgaaaact 26191540  T
Q  182 attgcttagagttccatagcttcttccctccgattcat 219  Q
    ||||  ||| || ||||||||| || |||| |||||||    
T  26191539 attgtatagtgtgccatagcttttttcctctgattcat 26191502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 26242771 - 26242675
Alignment:
Q  82 cctttttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaa 178  Q
    |||| ||| |||| |||||||||||||| || ||||||| |||||| || |||||  | ||   ||||||||||||||||| ||||||||| |||||    
T  26242771 ccttgttagcccaggctgaaactggtccgacactccatgatttgattccgattgtagttttactaagattctcataatcactttcaagttcatgaaa 26242675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 26204263 - 26204144
Alignment:
Q  87 ttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgc 186  Q
    |||| |||||||||||| |||||||  ||||| | ||||||||| |||||  | ||   ||| ||||||||||||| ||| ||||| ||||| ||||||     
T  26204263 ttaatccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgt 26204164  T
Q  187 ttagagttccatagcttctt 206  Q
     ||| |||||| ||||||||    
T  26204163 atagtgttccaaagcttctt 26204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 26223901 - 26223782
Alignment:
Q  87 ttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgc 186  Q
    |||| |||||||||||| |||||||  ||||| | ||||||||| |||||  | ||   ||| ||||||||||||| ||| ||||| ||||| ||||||     
T  26223901 ttaatccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgt 26223802  T
Q  187 ttagagttccatagcttctt 206  Q
     ||| |||||| ||||||||    
T  26223801 atagtgttccaaagcttctt 26223782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 26179443 - 26179333
Alignment:
Q  96 gctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcttagagttc 195  Q
    ||||||||||||||||| ||||| | |||||||||||||||  | ||    |  || |||||||||| ||||||||| ||||| ||||||  ||| ||||    
T  26179443 gctgaaactggtcctacactccaagttttgatccccattgtagtgttacttaatttttcataatcactttcaagttcatgaaaactattgtatagtgttc 26179344  T
Q  196 catagcttctt 206  Q
    |||| ||||||    
T  26179343 cataacttctt 26179333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 26297819 - 26297682
Alignment:
Q  82 cctttttaacccatgctgaaactggtcctacgctccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagct 181  Q
    |||| ||| |||| |||||||||||||| || |||||||  ||||| || |||||  | ||  |||| ||||||||||||| ||||||||| ||||| ||    
T  26297819 ccttgttagcccaggctgaaactggtccgacactccatgacttgattccgattgtagttttaaaaagtttctcataatcactttcaagttcatgaaaact 26297720  T
Q  182 attgcttagagttccatagcttcttccctccgattcat 219  Q
     |||  ||| |  |||||||||||| || | |||||||    
T  26297719 gttgtatagtgacccatagcttctttccgctgattcat 26297682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 44903556 - 44903488
Alignment:
Q  150 ttctcataatcaccttcaagttcgtgaaagctattgcttagagttccatagcttcttccctccgattca 218  Q
    ||||||||||||| ||||||||| ||||| ||||||| ||  || ||||| |||||| |||||||||||    
T  44903556 ttctcataatcactttcaagttcatgaaaactattgcatattgtcccataacttcttgcctccgattca 44903488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University