View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18288_low_16 (Length: 223)

Name: NF18288_low_16
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18288_low_16
NF18288_low_16
[»] chr4 (1 HSPs)
chr4 (110-207)||(13993122-13993219)
[»] chr2 (1 HSPs)
chr2 (110-180)||(15344341-15344411)
[»] chr3 (3 HSPs)
chr3 (121-192)||(11486476-11486546)
chr3 (110-180)||(11436355-11436425)
chr3 (129-192)||(328298-328360)
[»] chr1 (1 HSPs)
chr1 (125-196)||(43134830-43134900)
[»] chr5 (2 HSPs)
chr5 (130-190)||(27602165-27602224)
chr5 (125-188)||(36562511-36562573)
[»] chr8 (1 HSPs)
chr8 (121-192)||(1346513-1346583)
[»] chr7 (1 HSPs)
chr7 (125-192)||(28770361-28770427)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 13993122 - 13993219
Alignment:
Q  110 aactttttacgttgttttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgtttatatcatatttatat 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  13993122 aacttttaacgttgttttgtaacaattggataatttccattttaaatttaatgttccgaaagttgtgttgtttcttatcgtttatatcatgtttatat 13993219  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 15344341 - 15344411
Alignment:
Q  110 aactttttacgttgttttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgt 180  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  15344341 aactttttatgttgttttgtaacaattggataatttccgttttaaatttaatgttgtgaaaattgtgttgt 15344411  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 11486476 - 11486546
Alignment:
Q  121 ttgttttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgttt 192  Q
    ||||||||||||  |||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||    
T  11486476 ttgttttgtaacctttggataatttcaattttaaatttaatgtt-tgacaattgtgttgtttcttatcgttt 11486546  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 11436355 - 11436425
Alignment:
Q  110 aactttttacgttgttttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgt 180  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||| ||||| ||| |||||    
T  11436355 aactttttatgttgttttgtaacaatttgataatttccgttttaaacttaatgttgtgaaaattgggttgt 11436425  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 328298 - 328360
Alignment:
Q  129 taacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgttt 192  Q
    ||||| |||||||||||  |||||||||||| |||  ||||| |||||||||||||||||||||    
T  328298 taacatttggataattttaattttaaatttattgta-tgaaaattgtgttgtttcttatcgttt 328360  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 43134900 - 43134830
Alignment:
Q  125 tttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgtttatat 196  Q
    ||||||||  ||||||||||||  |||||||||||| ||| | ||| |||||||||||||||||||||||||    
T  43134900 tttgtaacctttggataatttctgttttaaatttaaggtt-taaaaattgtgttgtttcttatcgtttatat 43134830  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 27602224 - 27602165
Alignment:
Q  130 aacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgt 190  Q
    |||| |||||||||||   |||||||||||||||| ||||| |||||||||||||||||||    
T  27602224 aacatttggataatttttgttttaaatttaatgtt-tgaaacttgtgttgtttcttatcgt 27602165  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 36562511 - 36562573
Alignment:
Q  125 tttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatc 188  Q
    ||||||||  |||||||||||   |||||||||||||||| ||||| |||||||||||||||||    
T  36562511 tttgtaacctttggataattttagttttaaatttaatgtt-tgaaaattgtgttgtttcttatc 36562573  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 1346583 - 1346513
Alignment:
Q  121 ttgttttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgttt 192  Q
    ||||||||||||  |||||||| |||  |||||||||| ||||| ||||| |||||||||||||| ||||||    
T  1346583 ttgttttgtaacctttggataacttcagttttaaattttatgtt-tgaaaattgtgttgtttcttctcgttt 1346513  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 28770361 - 28770427
Alignment:
Q  125 tttgtaacaattggataatttccattttaaatttaatgttctgaaagttgtgttgtttcttatcgttt 192  Q
    ||||||||  ||||||||||||  ||||||||||| |||| ||||| |||||||||||||||| ||||    
T  28770361 tttgtaacctttggataatttcagttttaaatttattgtt-tgaaaattgtgttgtttcttattgttt 28770427  T

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