View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18288_low_3 (Length: 461)
Name: NF18288_low_3
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 54472079 - 54472534
Alignment:
| Q |
1 |
tccgacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagca |
100 |
Q |
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| T |
54472079 |
tccgacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagca |
54472178 |
T |
|
| Q |
101 |
gttgcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattact |
200 |
Q |
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| T |
54472179 |
gttgcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattact |
54472278 |
T |
|
| Q |
201 |
accctactccagcacacggtatatatttttatatatctcctatttcnnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaat |
300 |
Q |
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| T |
54472279 |
accctactccagcacacggtatatatttttatatatctcctatttctttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaat |
54472378 |
T |
|
| Q |
301 |
ggaggaag------------ttaattaattaatgattcatagcctattcttannnnnnngatcagaaatggatcctctaaagcttttgcatggtgccata |
388 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472379 |
gggggaagctaattaattaattaattaattaatgattcatagcctattcttatttttttgatcagaaatggatcctctaaagcttttgcatggtgccata |
54472478 |
T |
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| Q |
389 |
gtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgc |
444 |
Q |
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| T |
54472479 |
gtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgc |
54472534 |
T |
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