View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18288_low_4 (Length: 435)
Name: NF18288_low_4
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_4 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 52800280 - 52800484
Alignment:
| Q |
14 |
gagatgaaacaaactgagaaggagtaacaccttcgttgacaagagatttaatggattcaacaagagtgcgtgtcagatctagaaatgcttcagcgtcagc |
113 |
Q |
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| T |
52800280 |
gagatgaaacaaactgagaaggagtaacaccttcgttgacaagagatttaacggatccaacaagagtgcgtgtcagatctagaagtgcttcagcgtcagc |
52800379 |
T |
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| Q |
114 |
aacctgttctcgaggtttcttcacttgctcgtgtaacttatcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttt |
213 |
Q |
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| T |
52800380 |
aacctgttctcgaggtttcttcacttgctcatgtaacttatcgaactcgtgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttt |
52800479 |
T |
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| Q |
214 |
tcctc |
218 |
Q |
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||||| |
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| T |
52800480 |
tcctc |
52800484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 52800651 - 52800729
Alignment:
| Q |
339 |
ggcggcggcgacgttgaggcgttctctcttaacgcgacgaaacagttgttgttcttcttctcctctacaagccattgct |
417 |
Q |
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| T |
52800651 |
ggcggcggcggcgttgaggcgttctctcttaacgcgacgaaacacttgttgttcttcttctcctctacgagccattgct |
52800729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 52800548 - 52800618
Alignment:
| Q |
218 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcc |
288 |
Q |
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| T |
52800548 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatactggagtcctgattctcc |
52800618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 31784 - 31984
Alignment:
| Q |
14 |
gagatgaaacaaactgagaaggagtaacaccttcgttgacaagagatttaatggattcaacaagagtgcgtgtcagatctagaaatgcttcagcgtcagc |
113 |
Q |
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||||||| |||||||||||||||||||| |||||||| || | ||| |||| ||| |||| |||||||||||||||||||||| ||||||||||||| | |
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| T |
31784 |
gagatgacacaaactgagaaggagtaaccccttcgttcaccatagagttaaccgatccaaccagagtgcgtgtcagatctagaagtgcttcagcgtcaac |
31883 |
T |
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| Q |
114 |
aacctgttctcgaggtttcttcacttgctcgtgtaacttatcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttt |
213 |
Q |
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| T |
31884 |
aatctgctcttgtggcttcttcacttgctcgtctaacttgtcgaagtcatgaaggattgaatcgaacttgtccgaagcagtgttcattaaatcatctttt |
31983 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
31984 |
t |
31984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 32070 - 32140
Alignment:
| Q |
218 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
32070 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatgttggagtcctgatgctcc |
32140 |
T |
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