View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18288_low_5 (Length: 385)
Name: NF18288_low_5
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 48324575 - 48324216
Alignment:
| Q |
11 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324575 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
48324476 |
T |
|
| Q |
111 |
aaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
210 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324475 |
aaggtcccgtcttgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
48324376 |
T |
|
| Q |
211 |
tgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaaagattctcttttccttgagactttgttatttttatgtct |
310 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
48324375 |
ggtttacaatgaaagatctgtgtttcatggccgaagaatcccaagcaaggtacacattcaaagatcctctttttcttgagactttgttatttttatgtct |
48324276 |
T |
|
| Q |
311 |
cacaa-aaaacatacaattgtagcggtatttgtcatgtttctgattctcgactatatttt |
369 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48324275 |
cacaaaaaaacatacaattgtagcggtatttgtcatgtttctgattctcgattatatttt |
48324216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 263
Target Start/End: Complemental strand, 31269209 - 31268985
Alignment:
| Q |
39 |
cttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttg |
138 |
Q |
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| T |
31269209 |
cttcgatgattcctatgattcataaacctccattcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtg |
31269110 |
T |
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| Q |
139 |
ggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcat |
238 |
Q |
| |
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||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||| |||| ||||| | |||| || || |||||| |
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| T |
31269109 |
ggagaaattcttcaaaggaaatgaagggttgtattctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaagctcagtctttcat |
31269010 |
T |
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| Q |
239 |
ggccgaagaatctcaagcaaggtac |
263 |
Q |
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|||||||||||| |||||||||||| |
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| T |
31269009 |
ggccgaagaatcccaagcaaggtac |
31268985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 1136158 - 1136418
Alignment:
| Q |
11 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
110 |
Q |
| |
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|||||||| |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| ||||||| |
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| T |
1136158 |
atgaacgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaa |
1136257 |
T |
|
| Q |
111 |
aaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
210 |
Q |
| |
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||||||| || ||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||| || || || |||||| |||| |
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| T |
1136258 |
aaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggttgtattcgatctacgttcatcctagcccttccttcaatgaaac |
1136357 |
T |
|
| Q |
211 |
tgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaa |
271 |
Q |
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||||| | | |||| | ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
1136358 |
cgtttataatcaaagcttagtgtttcatggccgaagaatcccaagcaaggtatgcattcaa |
1136418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 1139409 - 1139620
Alignment:
| Q |
51 |
ctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattctt |
150 |
Q |
| |
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|||||||||| || |||| || || |||||||||||| |||| || ||||| |||||||||||||| | ||||||||||| ||||||| |||||||| |
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| T |
1139409 |
ctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctt |
1139508 |
T |
|
| Q |
151 |
caaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatc |
250 |
Q |
| |
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| T |
1139509 |
taaaggaaacgaagggttgtattcgatctacgttcatcctagtccttccttcaatgaaacagtttataatcaaagctcagtgttttatggccgaagaatc |
1139608 |
T |
|
| Q |
251 |
tcaagcaaggta |
262 |
Q |
| |
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||||||||||| |
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| T |
1139609 |
ccaagcaaggta |
1139620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 286
Target Start/End: Complemental strand, 54479328 - 54479092
Alignment:
| Q |
51 |
ctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattctt |
150 |
Q |
| |
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|||||||||| || |||| ||||| |||||||||||| |||| |||||||| ||||||| |||||| || ||||||||||| ||||||| |||||||| |
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| T |
54479328 |
ctatgattcataaaactccattcaaacaaacaccaaaggttgcgtttatgttcttgacaataggtcctgttttgttggctccactttgggagaaattctt |
54479229 |
T |
|
| Q |
151 |
caaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatc |
250 |
Q |
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|||||||||||||||| | ||||| |||||||| ||||| | ||| ||||||||| ||| ||||| | | |||| || |||||||||| ||||||||| |
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| T |
54479228 |
caaaggaaatgaagggttatattctatctacatacatcctaatccttctttcaatgaaatggtttatactcaaagctcagtgtttcatgatcgaagaatc |
54479129 |
T |
|
| Q |
251 |
tcaagcaaggtacacattc-aaagattctcttttcct |
286 |
Q |
| |
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||||||||||| |||| ||| ||||||||||||| |
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| T |
54479128 |
ccaagcaaggtatcaattcaaaatattctcttttcct |
54479092 |
T |
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