View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18288_low_6 (Length: 376)
Name: NF18288_low_6
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18288_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 53901567 - 53901213
Alignment:
| Q |
16 |
gatatgatgaggaaaatcaaagctgctatagtatggattctcaagctagagcaccttcatttgctagaaggactttgctttggctcactggaaaacaaaa |
115 |
Q |
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| T |
53901567 |
gatatgatgaggaaaatcaaagctgctatagtatggattctcaagctagagcaccttcatttgctagaaggactttgctttggctcactggaaaacaaaa |
53901468 |
T |
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| Q |
116 |
taaggttgttcattcatcaactacttcaaccctctagttcttatctttctattatcttacaattgtagaatatagatttattaaactagatttttagtgg |
215 |
Q |
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| T |
53901467 |
taaggttgttcattcatcaactacttcaaccctctagttcttatctttctattatcttacaattgtagaatatagatttattaaactagatttttagtgg |
53901368 |
T |
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| Q |
216 |
tagaaaggtgccggagg-nnnnnnnnnnntgattagtttgtgggatttgaatacatcagagttctcgatgaattttttctgttccattgagtatgagtcc |
314 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53901367 |
tagaaaggtgcaggaggaaaaaaaatatatgattagtttgtgggatttgaatacatcagagttctacatgaattttttctgttccattgagtatgagtcc |
53901268 |
T |
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| Q |
315 |
accttagtggaggtgaaaacaatgttaagagattcttttgttcacctagcctatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901267 |
accttagtggaggtgaaaacaatgttaagagattcttttgttcacctagcctatg |
53901213 |
T |
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