View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18288_low_7 (Length: 341)

Name: NF18288_low_7
Description: NF18288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18288_low_7
NF18288_low_7
[»] chr5 (30 HSPs)
chr5 (147-332)||(2618109-2618290)
chr5 (3-146)||(791592-791735)
chr5 (14-146)||(26534630-26534762)
chr5 (6-144)||(8323833-8323970)
chr5 (17-146)||(130383-130512)
chr5 (54-146)||(33377820-33377912)
chr5 (53-143)||(42630878-42630968)
chr5 (54-146)||(5146675-5146767)
chr5 (54-147)||(13823320-13823413)
chr5 (69-146)||(26534506-26534583)
chr5 (55-146)||(6518203-6518294)
chr5 (55-146)||(8489123-8489214)
chr5 (55-146)||(19898927-19899018)
chr5 (69-146)||(130254-130331)
chr5 (69-146)||(8323707-8323784)
chr5 (54-147)||(228716-228809)
chr5 (55-143)||(35454623-35454710)
chr5 (69-146)||(42630711-42630788)
chr5 (55-146)||(40881792-40881881)
chr5 (77-146)||(14388515-14388583)
chr5 (77-146)||(35454451-35454519)
chr5 (78-146)||(14069861-14069928)
chr5 (78-148)||(5146502-5146571)
chr5 (77-143)||(19897228-19897293)
chr5 (55-129)||(40881992-40882066)
chr5 (89-146)||(791810-791867)
chr5 (62-146)||(13823150-13823233)
chr5 (83-146)||(6518404-6518466)
chr5 (58-131)||(27319643-27319716)
chr5 (85-143)||(228987-229044)
[»] chr4 (13 HSPs)
chr4 (1-148)||(40534084-40534229)
chr4 (1-146)||(3102661-3102804)
chr4 (3-127)||(9231703-9231825)
chr4 (69-146)||(3102540-3102617)
chr4 (69-145)||(13690216-13690292)
chr4 (55-146)||(18936850-18936941)
chr4 (55-146)||(37177799-37177890)
chr4 (69-146)||(9231580-9231657)
chr4 (69-146)||(40533963-40534040)
chr4 (77-146)||(11147014-11147083)
chr4 (61-146)||(18381488-18381573)
chr4 (80-146)||(5121005-5121071)
chr4 (66-146)||(18936676-18936755)
[»] chr1 (25 HSPs)
chr1 (3-146)||(10227712-10227853)
chr1 (3-146)||(26552113-26552256)
chr1 (55-146)||(23346419-23346510)
chr1 (55-146)||(48871410-48871501)
chr1 (69-142)||(19059378-19059451)
chr1 (54-146)||(50892963-50893055)
chr1 (55-146)||(28217692-28217783)
chr1 (53-137)||(19059549-19059633)
chr1 (54-145)||(39669230-39669321)
chr1 (80-146)||(10227910-10227976)
chr1 (54-146)||(41833874-41833966)
chr1 (69-144)||(26551992-26552067)
chr1 (77-147)||(48752589-48752658)
chr1 (59-145)||(50904992-50905080)
chr1 (55-119)||(7062034-7062098)
chr1 (80-147)||(48871246-48871312)
chr1 (80-147)||(50893161-50893227)
chr1 (77-146)||(28217530-28217598)
chr1 (77-146)||(42180571-42180639)
chr1 (77-146)||(4156892-4156960)
chr1 (77-146)||(7062192-7062260)
chr1 (77-146)||(41834071-41834139)
chr1 (77-145)||(50905107-50905175)
chr1 (54-147)||(42180744-42180835)
chr1 (81-137)||(23346620-23346675)
[»] chr8 (15 HSPs)
chr8 (1-147)||(37994829-37994973)
chr8 (55-146)||(41539770-41539861)
chr8 (54-146)||(2814416-2814508)
chr8 (54-146)||(397177-397269)
chr8 (69-146)||(37994708-37994785)
chr8 (69-146)||(44036814-44036891)
chr8 (66-146)||(14193509-14193588)
chr8 (74-146)||(41539963-41540034)
chr8 (69-146)||(2814243-2814319)
chr8 (55-146)||(14193324-14193414)
chr8 (53-130)||(25101746-25101823)
chr8 (69-146)||(397007-397083)
chr8 (3-90)||(44036937-44037022)
chr8 (83-146)||(40587991-40588054)
chr8 (8-45)||(25102377-25102414)
[»] chr3 (14 HSPs)
chr3 (3-146)||(27073029-27073172)
chr3 (17-146)||(33214443-33214572)
chr3 (3-146)||(36274120-36274266)
chr3 (54-146)||(36635410-36635502)
chr3 (55-146)||(19580483-19580574)
chr3 (69-146)||(33214626-33214703)
chr3 (69-144)||(10598810-10598885)
chr3 (69-146)||(33219072-33219149)
chr3 (69-146)||(36274312-36274389)
chr3 (84-146)||(10599000-10599062)
chr3 (85-146)||(27072913-27072974)
chr3 (55-146)||(11651000-11651091)
chr3 (78-143)||(36635241-36635305)
chr3 (1-75)||(33219193-33219265)
[»] chr2 (22 HSPs)
chr2 (1-146)||(42028578-42028721)
chr2 (3-146)||(13279956-13280099)
chr2 (3-146)||(31860202-31860349)
chr2 (6-146)||(2059608-2059748)
chr2 (6-146)||(7317761-7317899)
chr2 (53-146)||(16115046-16115139)
chr2 (73-146)||(36059278-36059351)
chr2 (69-146)||(42028765-42028842)
chr2 (54-146)||(31470587-31470678)
chr2 (64-146)||(15332844-15332926)
chr2 (77-146)||(31860079-31860148)
chr2 (55-147)||(38086140-38086232)
chr2 (69-146)||(7317635-7317712)
chr2 (74-147)||(38085966-38086038)
chr2 (69-148)||(2059488-2059567)
chr2 (80-145)||(3671822-3671886)
chr2 (85-146)||(13279840-13279901)
chr2 (69-146)||(16115231-16115308)
chr2 (55-147)||(3671996-3672088)
chr2 (89-148)||(15330447-15330505)
chr2 (80-147)||(31470776-31470842)
chr2 (117-146)||(36059248-36059277)
[»] chr6 (8 HSPs)
chr6 (3-145)||(33022287-33022431)
chr6 (54-147)||(21389020-21389113)
chr6 (69-146)||(33022164-33022241)
chr6 (54-145)||(7789842-7789933)
chr6 (77-143)||(21389217-21389282)
chr6 (64-135)||(7789678-7789748)
chr6 (56-145)||(28472535-28472624)
chr6 (56-145)||(29859723-29859813)
[»] scaffold0214 (2 HSPs)
scaffold0214 (3-142)||(11630-11768)
scaffold0214 (69-146)||(11814-11891)
[»] chr7 (10 HSPs)
chr7 (54-146)||(7298635-7298727)
chr7 (54-146)||(40521188-40521280)
chr7 (53-146)||(19805585-19805678)
chr7 (69-146)||(19804797-19804874)
chr7 (77-146)||(40521016-40521084)
chr7 (78-146)||(7298833-7298900)
chr7 (77-147)||(28949001-28949070)
chr7 (77-143)||(46567960-46568025)
chr7 (77-146)||(16979613-16979681)
chr7 (54-120)||(46568130-46568196)
[»] scaffold0135 (2 HSPs)
scaffold0135 (3-127)||(37569-37691)
scaffold0135 (69-146)||(37446-37523)
[»] scaffold0140 (2 HSPs)
scaffold0140 (78-146)||(15847-15915)
scaffold0140 (115-144)||(16045-16074)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 147 - 332
Target Start/End: Original strand, 2618109 - 2618290
Alignment:
Q  147 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaaataataattatcataaaaatattggtattgagacac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  2618109 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaa----taattatcataaaaatattggtattgagacac 2618204  T
Q  247 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctctggtgttttcctttgc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618205 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctctggtgttttcctttgc 2618290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 791735 - 791592
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  791735 aactagtggtggtggagagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 791636  T
Q  103 tgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| || ||||||||||||||||||||| ||||||||    
T  791635 tgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 26534630 - 26534762
Alignment:
Q  14 gtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatga 113  Q
    |||||||||||||| ||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26534630 gtggagagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatga 26534729  T
Q  114 tatgttaggttcgttcctacacaagaatttctc 146  Q
    || ||||||||||||||||||||||||||||||    
T  26534730 taggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 8323833 - 8323970
Alignment:
Q  6 tagtggtggtggagagagagaggaaggactagttaatttannnnnnn-ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttg 104  Q
    |||||||||||||||||||||  ||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323833 tagtggtggtggagagagaga--aaggactagttgatttattttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttg 8323930  T
Q  105 taaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8323931 taaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 130383 - 130512
Alignment:
Q  17 gagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatat 116  Q
    ||||||||||| ||||||||||| |||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  130383 gagagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgatag 130482  T
Q  117 gttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| ||||| |||||||||||    
T  130483 gttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 33377820 - 33377912
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  33377820 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 42630878 - 42630968
Alignment:
Q  53 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  42630878 ataattattttaaaagaaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 5146675 - 5146767
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  5146675 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 13823320 - 13823413
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||    
T  13823320 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctcc 13823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 26534583 - 26534506
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 6518294 - 6518203
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6518294 aattattttaaaataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 8489214 - 8489123
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8489214 aattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 19898927 - 19899018
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  19898927 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 130331 - 130254
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8323784 - 8323707
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 228809 - 228716
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||| |||||||  ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||  |||||||||    
T  228809 taattattttaaaataaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctcc 228716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 35454623 - 35454710
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35454623 aattatttttaactaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 42630788 - 42630711
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 40881881 - 40881792
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||   ||||||||||||||||||||||| ||||||||    
T  40881881 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaat--aatgttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 14388515 - 14388583
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388515 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 35454519 - 35454451
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454519 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 14069928 - 14069861
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 5146571 - 5146502
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5146571 acgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctcca 5146502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 19897293 - 19897228
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897293 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 40881992 - 40882066
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttc 129  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  40881992 aattattttaaaataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  89 tttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 13823233 - 13823150
Alignment:
Q  62 ttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||| ||  ||||||||||||||| ||| |||||| || | |||||| ||||||||||||||||||||||||||||||    
T  13823233 ttaaaagaaaaaaaatacgtgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  83 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 27319643 - 27319716
Alignment:
Q  58 tattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcct 131  Q
    |||||||||| ||||||| || || |||| ||||||||||||||||||||| |||||||||||| || ||||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 40534084 - 40534229
Alignment:
Q  1 ccaactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40534084 ccaactagtggtggtggagagagaga--aaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 40534181  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40534182 tttgtaaggatgataggttaggttcgttcctacacaagaatttctcca 40534229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 3102661 - 3102804
Alignment:
Q  1 ccaactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||       ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3102661 ccaactagtggtggtggagagagaga--aaggactagttgatttaattttttataattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttg 3102758  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  3102759 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 9231703 - 9231825
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9231703 aactaatggtggtggagagagaga--aaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtt 9231800  T
Q  103 tgtaaggatgatatgttaggttcgt 127  Q
    ||||||||||||| |||||||||||    
T  9231801 tgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 3102617 - 3102540
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 18936850 - 18936941
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  18936850 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 37177799 - 37177890
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  37177799 aattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 9231657 - 9231580
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 40534040 - 40533963
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 11147083 - 11147014
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 18381488 - 18381573
Alignment:
Q  61 tttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 5121005 - 5121071
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 18936755 - 18936676
Alignment:
Q  66 aagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| || ||||| |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||    
T  18936755 aagaaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 10227853 - 10227712
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||||||||||||||||||||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227853 aactagtggtggtggagagagaga--aaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 10227756  T
Q  103 tgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  10227755 tgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 26552113 - 26552256
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||       |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26552113 aactagtggcggtggagagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtt 26552212  T
Q  103 tgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  26552213 tgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 23346510 - 23346419
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23346510 aattattttaaaataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 48871410 - 48871501
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48871410 aattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 50893055 - 50892963
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  50893055 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 28217692 - 28217783
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28217692 aattattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 19059549 - 19059633
Alignment:
Q  53 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 137  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  19059549 ataattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 39669230 - 39669321
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||||||||||| |||||||  |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  39669230 taattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 10227910 - 10227976
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 41833966 - 41833874
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||| |||||| ||||||| |||| |||||| ||| |||||||||||||    
T  41833966 taattattttaaaataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 48752589 - 48752658
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  48752589 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcc 48752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 50905080 - 50904992
Alignment:
Q  59 attttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatg--atatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||  |||  |||| ||||||||||||||||||||||||||||    
T  50905080 attttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 7062098 - 7062034
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtt 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7062098 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgtt 7062034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 48871312 - 48871246
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  48871312 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctcc 48871246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 50893161 - 50893227
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  50893161 gtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctcc 50893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 28217598 - 28217530
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||    
T  28217598 gacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 42180639 - 42180571
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  42180639 gacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 4156960 - 4156892
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156960 gacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 7062192 - 7062260
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  7062192 gacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 41834071 - 41834139
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834071 gacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 50905107 - 50905175
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| ||||||  ||||||| |||||||    
T  50905107 gacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 42180744 - 42180835
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||| |||| || || ||||||||||||| ||||||||||||||| ||||||| |||| |||||| | | ||||||||||||||    
T  42180744 taattattttaaaataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgatat-ttagattcgtttc-atacaagaatttctcc 42180835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  81 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 137  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 37994829 - 37994973
Alignment:
Q  1 ccaactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||| |||    
T  37994829 ccaactagtggtggtggagagagaga--aaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttattg 37994926  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  37994927 tttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 37994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 41539861 - 41539770
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41539861 aattattttaaaataaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 2814416 - 2814508
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2814416 taattatttttaaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 397177 - 397269
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  397177 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 37994785 - 37994708
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 44036891 - 44036814
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 14193509 - 14193588
Alignment:
Q  66 aagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14193509 aagaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 41539963 - 41540034
Alignment:
Q  74 aacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41539963 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 2814319 - 2814243
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814319 aaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 14193414 - 14193324
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||  || |||||||||||||||||||| |||| ||||||||    
T  14193414 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 25101823 - 25101746
Alignment:
Q  53 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcc 130  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||    
T  25101823 ataattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 397083 - 397007
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||| |||||| |||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  397083 aaaaaaacaacgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 44036937 - 44037022
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttt 90  Q
    ||||||||||||||||||||||||  || || || ||||||||       ||||||||||||||||||||||||||||||||||||||    
T  44036937 aactagtggtggtggagagagaga--aatgattaattaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttt 44037022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 40587991 - 40588054
Alignment:
Q  83 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||| ||| |||  ||||||| |||  ||||||||||||| ||||||||||    
T  40587991 tcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 25102414 - 25102377
Alignment:
Q  8 gtggtggtggagagagagaggaaggactagttaattta 45  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  25102414 gtggtggtggagagagagagaaaggactagttgattta 25102377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 27073029 - 27073172
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||||||||||||||| ||||||| ||||||| ||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073029 aactagtggtggtggagggagagagaaaggacttgttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 27073128  T
Q  103 tgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  27073129 tgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 33214572 - 33214443
Alignment:
Q  17 gagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatat 116  Q
    ||||||||||| || |||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33214572 gagagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatag 33214473  T
Q  117 gttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||    
T  33214472 gttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 36274266 - 36274120
Alignment:
Q  3 aactagtggtggtggagagagagagg----aaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgt 98  Q
    |||||||||||||||||||||||||     ||| ||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  36274266 aactagtggtggtggagagagagagagagaaagaactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgt 36274167  T
Q  99 tgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36274166 tgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 36635410 - 36635502
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36635410 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 19580483 - 19580574
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19580483 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 33214626 - 33214703
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 33219149 - 33219072
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 36274312 - 36274389
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 27072974 - 27072913
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 11651091 - 11651000
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||| ||  | |||| |||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  11651091 aattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33219193 - 33219265
Alignment:
Q  1 ccaactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaa 75  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||       |||||||||||||||||||||||    
T  33219193 ccaactagtggtggtggagagagaga--aaggactagttgatttaattttttataattattttaaaagaaaacaa 33219265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42028721 - 42028578
Alignment:
Q  1 ccaactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42028721 ccaactagtggtggtggagagagaga--aaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 42028624  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  42028623 tttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 13279956 - 13280099
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||||||||||||||| ||||||| ||||||| ||| |||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13279956 aactagtggtggtggagggagagagaaaggacttgttgatttatttttttataattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtt 13280055  T
Q  103 tgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  13280056 tgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 31860202 - 31860349
Alignment:
Q  3 aactagtggtggtggagagagagagg----aaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgt 98  Q
    |||||||||||||||||||||||||     |||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||    
T  31860202 aactagtggtggtggagagagagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgatgtgtcatgttttaatttgt 31860301  T
Q  99 tgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||    
T  31860302 tgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 2059608 - 2059748
Alignment:
Q  6 tagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgt 105  Q
    |||||||||||||||||||||| || |||||||| |||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2059608 tagtggtggtggagagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgt 2059707  T
Q  106 aaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| |||||||||||||| |||||| ||||||||    
T  2059708 aaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 7317761 - 7317899
Alignment:
Q  6 tagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgt 105  Q
    |||||||||||||||||||||  || |||||||| |||||       |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||    
T  7317761 tagtggtggtggagagagaga--aatgactagttgatttatttttttataattattttaaaagaaaaaaacaatgtgtcatgttttaatttattgtttgt 7317858  T
Q  106 aaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7317859 aaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 16115139 - 16115046
Alignment:
Q  53 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  16115139 ataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 36059278 - 36059351
Alignment:
Q  73 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36059278 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 42028765 - 42028842
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 31470678 - 31470587
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470678 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 15332844 - 15332926
Alignment:
Q  64 aaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 31860148 - 31860079
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31860148 gacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 38086140 - 38086232
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||    
T  38086140 aattattttaaaataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctcc 38086232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 7317712 - 7317635
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 38086038 - 38085966
Alignment:
Q  74 aacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  38086038 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctcc 38085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 2059567 - 2059488
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    ||||||| || ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctcca 2059488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 3671886 - 3671822
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671886 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 16115231 - 16115308
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| || ||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 3671996 - 3672088
Alignment:
Q  55 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||| ||||||| ||||||| || |||||||||||| |||||||  ||||||| |||| ||||||||| || ||||||||||||    
T  3671996 aattattttaaaataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctcc 3672088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 15330505 - 15330447
Alignment:
Q  89 tttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcca 15330447  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 31470776 - 31470842
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  31470776 gtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 31470842  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 36059277 - 36059248
Alignment:
Q  117 gttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||    
T  36059277 gttaggttcgttcctacacaagaatttctc 36059248  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 33022287 - 33022431
Alignment:
Q  3 aactagtggtggtggagagagagagg--aaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||   || |||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33022287 aactagtggtggtggagagagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttg 33022386  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33022387 tttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 21389113 - 21389020
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21389113 taattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctcc 21389020  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 33022241 - 33022164
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 7789842 - 7789933
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7789842 taattattttttaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 21389217 - 21389282
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21389217 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  64 aaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacac 135  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  56 attattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||| ||  |||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 29859723 - 29859813
Alignment:
Q  56 attattttaaaagaaaacaacga-cgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||| ||  | ||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  29859723 attattttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

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Target: scaffold0214 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 11768 - 11630
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnn-ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgt 101  Q
    ||||||||||||||||||||||||  ||||||||||| |||||        ||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  11768 aactagtggtggtggagagagaga--aaggactagttgatttagtttttttataattattttaaaagaaaacaatgatgtgtcatattttaatttgttgt 11671  T
Q  102 ttgtaaggatgatatgttaggttcgttcctacacaagaatt 142  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11670 ttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

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Target: scaffold0214; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 11814 - 11891
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 7298727 - 7298635
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7298727 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 40521188 - 40521280
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40521188 taattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 19805585 - 19805678
Alignment:
Q  53 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19805585 ataattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 19804874 - 19804797
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 40521084 - 40521016
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521084 gacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 7298833 - 7298900
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 28949001 - 28949070
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  28949001 gacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 28949070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 46568025 - 46567960
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568025 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 16979613 - 16979681
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979613 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 46568130 - 46568196
Alignment:
Q  54 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtta 120  Q
    |||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  46568130 taattatttttaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 37569 - 37691
Alignment:
Q  3 aactagtggtggtggagagagagaggaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtt 102  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  37569 aactaatggtggtggagagagaga--aaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtt 37666  T
Q  103 tgtaaggatgatatgttaggttcgt 127  Q
    ||||||||||||| |||||||||||    
T  37667 tgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 37523 - 37446
Alignment:
Q  69 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 15915 - 15847
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15915 acgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 16045 - 16074
Alignment:
Q  115 atgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||    
T  16045 atgttaggttcgttcctacacaagaatttc 16074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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