View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_high_5 (Length: 317)
Name: NF18289_high_5
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 5517851 - 5518169
Alignment:
| Q |
18 |
tttttaaatataaataaatggcttagactaacaaaacaataaacccaa-------gggagggagggagagagattatcgtaattaccgttcacgacttcc |
110 |
Q |
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| T |
5517851 |
tttttaaatataaataaatggcttagactaacaaaacaataaacccaaagagagagggaaggagggagagagattgtcgtaattaccgttcacgacttcc |
5517950 |
T |
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| Q |
111 |
ctcttcatgcttttgacaaacttgtcctctctgggttggt---actaataagaggacaatagagctataaacccctccaccac---------ccaactag |
198 |
Q |
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| T |
5517951 |
ctcctcatgcttttgacaaacttgtcctctctgggttggtggtactaataagaggacaatagagctataaacccctccaccacccaccccacccaactag |
5518050 |
T |
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| Q |
199 |
taggataaactcataaggctatgaaagaaccaaaaccctcaaacacatatcagatccatccctaccaaaaacaataaacaccatcgacacctacatagaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5518051 |
taggataaactcataaggctatgaaagaaccaaaaccctcaaacacatatcagatccatccctaccaaaaacaataaacaccatcgacacctacatagaa |
5518150 |
T |
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| Q |
299 |
ttagttctaccacccaccc |
317 |
Q |
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| T |
5518151 |
ttagtaataccacccaccc |
5518169 |
T |
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