View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_1 (Length: 528)
Name: NF18289_low_1
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 55143885 - 55144384
Alignment:
| Q |
18 |
gacctatacttcaaatcaaaatttaccattaccgatatccctaactgtttggctggctctcttgctgctcaaatgtgaattactttttaactttctttaa |
117 |
Q |
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| T |
55143885 |
gacctatatttcaaatcaaaatttaccattaccgatatccctaactgtttggctggctctcttgctgctcaaatgtgaattactttttaactttctttaa |
55143984 |
T |
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| Q |
118 |
cattgttccttaatcatatgtgaagcacgatttcaaattctacctcccaacacctacatttgtataaatttgtatttcagttagattgtaaagtaccctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55143985 |
cattgttccttaatcatatgtgaagcacgatttcaaattctacctcccaacacctacatttgtataaatttgtatttcagttagattgtaaagtaccctt |
55144084 |
T |
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| Q |
218 |
caatttttaggggtacccatgtttttacaaaattatatattacaatcaatattgagggatttgagttatctctatttgaatcaatacatgtgttgtaact |
317 |
Q |
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| T |
55144085 |
caatttttaggggtacccatgtttttacaaaattatatattgcattcaatattgagggatttgagttatctctatttggatcaatacatgtgctgtaact |
55144184 |
T |
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| Q |
318 |
tgtcaggtatctttgaatataatttttgacaaaaggtatctttgatttaattggtggttttatgactctcaaatgatattcgaagctggatgggaaccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55144185 |
tgtcaggtatctttgaatataatttttgacaaaaggtatctttgatttaattggtggttttatgactctcaaatgatattcgaagctggatgggaaccaa |
55144284 |
T |
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| Q |
418 |
acaaccgtgaagcaagaaatatcgtttgacttgagaaacaaaagtgtccttcagttggttggctcttatgcaaataaatgagaatcacatatattcctat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55144285 |
acaaccgtgaagcaagaaatatcgtttgacttgagaaacaaaagtgtccttcagttggttggctcttatgcaaataaatgagaatcacatatattcctat |
55144384 |
T |
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