View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_14 (Length: 216)
Name: NF18289_low_14
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 33237592 - 33237713
Alignment:
| Q |
79 |
aatattgatgcttcaaaatacaatattgatactttaaaatttctacttctgatccatatgatattgatgcttcaagatagtagtaaaaaggagaatttaa |
178 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33237592 |
aatattgatgcttcaaaatacaatattggcactttaaaatttctacttctgatccatatgatattgatgcttcaaaatagtagtaaaaaggagaatttaa |
33237691 |
T |
|
| Q |
179 |
accaccgttcctgccaaaagat |
200 |
Q |
| |
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| ||| |||||||||||||||| |
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|
| T |
33237692 |
atcactgttcctgccaaaagat |
33237713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 27115519 - 27115398
Alignment:
| Q |
79 |
aatattgatgcttcaaaatacaatattgatactttaaaatttctacttctgatccatatgatattgatgcttcaagatagtagtaaaaaggagaatttaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||| |
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| T |
27115519 |
aatattgatgcttcaaaatacaatattggcactttaaaatttctacttctgatccatataatattgatgcttcaaaatagtagtaagaaagagaatttaa |
27115420 |
T |
|
| Q |
179 |
accaccgttcctgccaaaagat |
200 |
Q |
| |
|
|| || |||||||||||||||| |
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|
| T |
27115419 |
actactgttcctgccaaaagat |
27115398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 1800405 - 1800526
Alignment:
| Q |
79 |
aatattgatgcttcaaaatacaatattgatactttaaaatttctacttctgatccatatgatattgatgcttcaagatagtagtaaaaaggagaatttaa |
178 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
1800405 |
aatatcgatgcttcaaaatacaatattggcactttaaaattgctacttctgatccatataatattgatgcttcaaaatagtagtaaaaaagagaatttaa |
1800504 |
T |
|
| Q |
179 |
accaccgttcctgccaaaagat |
200 |
Q |
| |
|
|| | |||| ||||||||||| |
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|
| T |
1800505 |
actattgttcttgccaaaagat |
1800526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 29664078 - 29664022
Alignment:
| Q |
15 |
aattcttaatgtcgtgagttcaagcctttccctgccttgtttttgacattttatctt |
71 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
29664078 |
aattcttaaggtcgcgagttcgagcctttccctgccttgttttttacattttatctt |
29664022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 16717024 - 16717080
Alignment:
| Q |
15 |
aattcttaatgtcgtgagttcaagcctttccctgccttgtttttgacattttatctt |
71 |
Q |
| |
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||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
16717024 |
aattcttaaggtcgcgagttcgggcctttccctgccttgttttttacattttatctt |
16717080 |
T |
|
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