View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_2 (Length: 464)
Name: NF18289_low_2
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 93 - 446
Target Start/End: Original strand, 7095397 - 7095750
Alignment:
| Q |
93 |
cttgtacaaaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatt |
192 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095397 |
cttgtgcaaaaaagcaagaagcttactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatt |
7095496 |
T |
|
| Q |
193 |
tgaatgttaatgttcaagttgagaatagaagggatttgatggaggtgttgactaaggtgaatggaattcttgagattttgatgaaaatggatcagtttga |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095497 |
tgaatgttaatgttcaagttgagaatagaagggatttgatggaggtgttgactaaggtgaatggaattcttgagattttgatgaaaatggatcagtttga |
7095596 |
T |
|
| Q |
293 |
taggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattgatgaaagat |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095597 |
taggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattgatgaaagat |
7095696 |
T |
|
| Q |
393 |
ggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095697 |
ggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
7095750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 296 - 446
Target Start/End: Complemental strand, 6749723 - 6749572
Alignment:
| Q |
296 |
gaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattgatgaaagatggt |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
6749723 |
gaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttgaataagttgaagattgagttgatgaaggatggt |
6749624 |
T |
|
| Q |
396 |
gtttctgtgcttgttttgactggtttgggtggatctggt-aaaaccactctt |
446 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6749623 |
gtttctgtactttttttgactggtttgggtggatctggtaaaaaccactctt |
6749572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 101 - 446
Target Start/End: Complemental strand, 6717725 - 6717362
Alignment:
| Q |
101 |
aaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatttgaatgtt |
200 |
Q |
| |
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|||||| ||||||| |||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
6717725 |
aaaaagtaagaagcttactttatggaactttctttcttttccaggttaccaaggaaagcttaagaagaaagatgaaggacttcagagacatttgtctgtt |
6717626 |
T |
|
| Q |
201 |
aatgttcaagttgagaatagaagggatttgatggaggtgttgactaaggtgaatggaattc---------ttgagattttgatgaaaatgga-------- |
283 |
Q |
| |
|
||||||||| ||||||||| || |||||||| || || || |||||||| ||| |||| ||||||||||||||| || ||| |
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| T |
6717625 |
aatgttcaacttgagaataaaaaagatttgatcaagctggtggctaaggtggatgaaatttccaagatttttgagattttgatgagaaaggagaatttgg |
6717526 |
T |
|
| Q |
284 |
-tcagtttgataggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaatt |
382 |
Q |
| |
|
|||||||||| | | ||| || ||||| |||||||||||||||||||||||| || |||||| | ||||| ||||| ||||||||||||||| |||| |
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| T |
6717525 |
gtcagtttgatggaagtcagattaggggattgtgtggtgctcctgaagagcctcagtgtatgggagttgatgagcctttgaataagttgaagattcaatt |
6717426 |
T |
|
| Q |
383 |
gatgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
6717425 |
attgaaagatggtgtttctgtacttgttttgactggtttaggtggatctggtaaaagcactctt |
6717362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 284 - 446
Target Start/End: Complemental strand, 6774801 - 6774639
Alignment:
| Q |
284 |
tcagtttgataggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattg |
383 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
6774801 |
tcagtttgatgggaaacaaataaggggtttgtttggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattg |
6774702 |
T |
|
| Q |
384 |
atgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
|
||||| | |||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
6774701 |
atgaagaagggtgcttctgtacttgttttgactggtttgggtggatctggtaaaagcactctt |
6774639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 296 - 446
Target Start/End: Complemental strand, 6725560 - 6725410
Alignment:
| Q |
296 |
gaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattgatgaaagatggt |
395 |
Q |
| |
|
||||||||| || ||||||| |||||||||| ||||||||| || || ||||||| | | | || ||| |||||||| ||||||||||||| |||||| |
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|
| T |
6725560 |
gaatcaaattagaggtttgtatggtgctcctcaagagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggt |
6725461 |
T |
|
| Q |
396 |
gtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6725460 |
gcttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
6725410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 296 - 446
Target Start/End: Complemental strand, 6740661 - 6740511
Alignment:
| Q |
296 |
gaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattgatgaaagatggt |
395 |
Q |
| |
|
||||||||| |||||| |||||||||||||| | ||||||| || || ||||||| | | | || ||| |||||||| ||||||||||||| |||||| |
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|
| T |
6740661 |
gaatcaaattaggggtctgtgtggtgctcctcaggagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggt |
6740562 |
T |
|
| Q |
396 |
gtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6740561 |
gcttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
6740511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 6762361 - 6762232
Alignment:
| Q |
284 |
tcagtttgataggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatga------acctttaaataagttgaagatt |
377 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||| || |
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|
| T |
6762361 |
tcagtttgatgggaaacagataaggggtttgtgtggtgctcctgaagagcctggatttattggaatggatgagccggcgcctttgaataatttgaaggtt |
6762262 |
T |
|
| Q |
378 |
gaattgatgaaagatggtgtttctgtgctt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
6762261 |
aaattgatgaaagatggtgtttctgtgctt |
6762232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 6762562 - 6762427
Alignment:
| Q |
101 |
aaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatttgaatgtt |
200 |
Q |
| |
|
|||||||||||||| |||| | ||||||| || ||| ||| ||||||||||||||||||||||| |||| | ||| ||||||| ||||||||| |
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|
| T |
6762562 |
aaaaagcaagaagcttacttggaagaacttttatttttttccaggttaccaaggaaagcttaagaagcaagacgcgaagcttgagagacacttgaatgtt |
6762463 |
T |
|
| Q |
201 |
aatgttcaagttgagaatagaagggatttgatggag |
236 |
Q |
| |
|
||||| ||||| ||||||| || |||||||||||| |
|
|
| T |
6762462 |
aatgtgcaagtcgagaataaaaatgatttgatggag |
6762427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 6731973 - 6731894
Alignment:
| Q |
367 |
agttgaagattgaattgatgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt |
446 |
Q |
| |
|
||||||||||||| ||| | || |||||||||||||| || |||||||||||||||||| |||| |||| |||||||| |
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|
| T |
6731973 |
agttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactctt |
6731894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 6740720 - 6740682
Alignment:
| Q |
207 |
caagttgagaatagaagggatttgatggaggtgttgact |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6740720 |
caagttgagaataaaagggatttgatggaggtgttgact |
6740682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 6725619 - 6725581
Alignment:
| Q |
207 |
caagttgagaatagaagggatttgatggaggtgttgact |
245 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6725619 |
caagttgaaaataaaagggatttgatggaggtgttgact |
6725581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 7095296 - 7095325
Alignment:
| Q |
12 |
atgaatggtttcaacgatttgttgggtcga |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7095296 |
atgaatggtttcaacgatttgttgggtcga |
7095325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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