View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_3 (Length: 421)
Name: NF18289_low_3
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 17379766 - 17379904
Alignment:
| Q |
267 |
ctaaacaaaattaattattccataaaaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagaca |
366 |
Q |
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| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtatagaga |
17379865 |
T |
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| Q |
367 |
gattaatagtccggtcaagccaaatgctcaaaaccaaac |
405 |
Q |
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| T |
17379866 |
gattaatagtctgatcaagccaaatgctcaaaatcaaac |
17379904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 17398821 - 17398900
Alignment:
| Q |
220 |
ctcataatggggataacaaagagaaataaaagccttttctcatcatgctaaacaaaattaattattccataaaaaattat |
299 |
Q |
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| T |
17398821 |
ctcataattgagataacaaagagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattat |
17398900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 17395245 - 17395314
Alignment:
| Q |
292 |
aaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtgg |
361 |
Q |
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| T |
17395245 |
aaaattattagcaaactaatataatcaaataacaatcaatagcgcaagttaacagtttcttctaaggtgg |
17395314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 4816540 - 4816584
Alignment:
| Q |
233 |
taacaaagagaaataaaagccttttctcatcatgctaaacaaaat |
277 |
Q |
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| T |
4816540 |
taacaaagagaaataagagccttttggcatcatgctaaacaaaat |
4816584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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