View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18289_low_4 (Length: 332)
Name: NF18289_low_4
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 10335960 - 10336110
Alignment:
| Q |
16 |
aggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagaagatgaatgtaaaaggagaggagcttgttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10335960 |
aggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagatgatgaatgtaaaaggagaggagcttgttg |
10336059 |
T |
|
| Q |
116 |
gtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336060 |
gtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
10336110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 10336542 - 10336680
Alignment:
| Q |
177 |
cctatcaaatagtttattggttagaaattcatatttttaaagtgaataagtgtcgcggtttgaactccggcagtatatattgtgcaaaccttcctaagct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
10336542 |
cctatcaaatagtttattggttagaaattcatatttttatagtgaataagtgtcgcggtttgaactctggcaatatatattatgcaaaccttcctaagct |
10336641 |
T |
|
| Q |
277 |
aagctgacggccggttggtgaacattttccaatagttct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336642 |
aagctgacggccggttggtgaacattttccaatagttct |
10336680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 19208853 - 19208900
Alignment:
| Q |
181 |
tcaaatagtttattggttagaaattcatatttttaaagtgaataagtg |
228 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
19208853 |
tcaaatggtttagtggttagaaattcacatttttaaagtgaataagtg |
19208900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 37318519 - 37318561
Alignment:
| Q |
186 |
tagtttattggttagaaattcatatttttaaagtgaataagtg |
228 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
37318519 |
tagtttgttggttaaaaattcatttttttaaagtgaataagtg |
37318561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 2710548 - 2710584
Alignment:
| Q |
189 |
tttattggttagaaattcatatttttaaagtgaataa |
225 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2710548 |
tttagtggttagaaattcatttttttaaagtgaataa |
2710584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University