View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_5 (Length: 327)
Name: NF18289_low_5
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 472114 - 472406
Alignment:
| Q |
17 |
taggtgacatttaatatgggaaagacggcttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagacc |
116 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
472114 |
taggtgacatttaatatgggaaagactgcttgtttcccaccataggaaagttgtttttaaaccatcagattatatgatgaacatagctttatgatagacc |
472213 |
T |
|
| Q |
117 |
acccacgctagatttcttctgcaatcatattcatcctttcacacacctcaaaaacaatctcagtatcagtgttccattgttatcgttattttcttctcca |
216 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
472214 |
acctacactagatttcttctgcaatcatattcatcctttcacacacctcaaaaacaatctcagtatcagtgttccattgttatcgttattttcttctcca |
472313 |
T |
|
| Q |
217 |
aatgttcaactaatctctcttcaataatgattgtcannnnnnnacaataacatgtaccaatctctcttcctttttccttttcttgttcttcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
472314 |
aatgttcaactaatctctcttcaataatgattgtcatttttttacaataacatgtaccaatctctcttcctttttccttttcttgttcttcct |
472406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 35106902 - 35107007
Alignment:
| Q |
49 |
tttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagat--ttcttctgcaatcatat |
146 |
Q |
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||||| ||||| | ||| || ||||| || |||||||| |||||| | ||||||||||||||||||||| ||| |||||| || |||||||||||||| |
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| T |
35106902 |
tttcctatcatgggaaagttattttttaagcatcagatcatatgacaaccatagctttatgatagaccactcacactagattatttttctgcaatcatat |
35107001 |
T |
|
| Q |
147 |
tcatcc |
152 |
Q |
| |
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||||| |
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|
| T |
35107002 |
gcatcc |
35107007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 54453122 - 54453227
Alignment:
| Q |
46 |
ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagatttcttctgcaatcata |
145 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||| ||||| |||||| ||| ||||||||| |
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| T |
54453122 |
ttgtttcccatcatggaaaaattattttttaaccatcagatcatatgatgagcatatctttatgatagaccgcccacactagatcgtttccgcaatcata |
54453221 |
T |
|
| Q |
146 |
ttcatc |
151 |
Q |
| |
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|||||| |
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|
| T |
54453222 |
ttcatc |
54453227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 35459574 - 35459504
Alignment:
| Q |
46 |
ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagacc |
116 |
Q |
| |
|
||||||| || |||||||||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
35459574 |
ttgtttctcaccatagaaaaattattttttaaccatcagatcatatgatgagcatatctttatgatagacc |
35459504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 43317137 - 43317032
Alignment:
| Q |
46 |
ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagcttt-atgatagaccacccacgctagatttcttctgcaatcat |
144 |
Q |
| |
|
|||||||||||||| | ||| || ||||| ||||||| ||| ||||||||| |||| |||| |||||||||| ||||| ||||||| |||||||||||| |
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| T |
43317137 |
ttgtttcccatcatgggaaa-ttattttttaaccatcggatcatatgatgagcatatcttttatgatagaccgcccacactagattgtttctgcaatcat |
43317039 |
T |
|
| Q |
145 |
attcatc |
151 |
Q |
| |
|
||||||| |
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|
| T |
43317038 |
attcatc |
43317032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 50950916 - 50950811
Alignment:
| Q |
46 |
ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagatttcttctgcaatcata |
145 |
Q |
| |
|
|||||||||| ||||| |||||| ||||| ||||||| || |||| |||| |||| ||||||||||||| ||||| ||||||| ||| ||||||||| |
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| T |
50950916 |
ttgtttcccaccataggaaaattattttttaaccatcgaatcatataatgagcatatctttatgatagactgcccacactagattgtttccgcaatcata |
50950817 |
T |
|
| Q |
146 |
ttcatc |
151 |
Q |
| |
|
|||||| |
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|
| T |
50950816 |
ttcatc |
50950811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 29291177 - 29291108
Alignment:
| Q |
46 |
ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagac |
115 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||| ||||| || |||||||||||||||||| |
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| T |
29291177 |
ttgtttcccatcatagaaaagttattttttaaccatcagaccatatggtgtgcatagctttatgatagac |
29291108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 3148224 - 3148288
Alignment:
| Q |
50 |
ttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagac |
115 |
Q |
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|||||||||| ||||| |||||||||| ||||||||||| |||| | |||||| ||||| |||||| |
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| T |
3148224 |
ttcccatcatggaaaagttgtttttaa-ccatcagattaaatgaagtacatagttttattatagac |
3148288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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