View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_7 (Length: 313)
Name: NF18289_low_7
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 45757929 - 45757629
Alignment:
| Q |
15 |
cagtgtggtgccggaacagcaacgtgaaggcggtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcagcattaattattttgat |
114 |
Q |
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| T |
45757929 |
cagtgtggtgccggaacagcaacgtgaaggcggtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcgtcattaattattttgat |
45757830 |
T |
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| Q |
115 |
caatttatatttnnnnnnnttattttgttgtccatatagtacaacttagaaccgtgatattcaacacat--gaatccaacaacgcataagatgcactgaa |
212 |
Q |
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| T |
45757829 |
caatttatattaaaataaattattttattgtccatatagtacaacttagaaccgtgatattcaacacatatgaatccaacaacgcataagatgcaccgaa |
45757730 |
T |
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| Q |
213 |
attgagtatacggaaaacgtattttatacggtacatgtttttgtctgagaagcatttttctaaaatataaacgtgcgtttttattcattaaggcttaagc |
312 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45757729 |
attgagtgtacggaaaccgtattttatacggtacatgtttttgtctgagaagcatttttctaaaatataaacgtgcgtttttattcattaaggcttaagc |
45757630 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
45757629 |
a |
45757629 |
T |
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