View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18289_low_9 (Length: 307)
Name: NF18289_low_9
Description: NF18289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18289_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 46187411 - 46187672
Alignment:
| Q |
22 |
cccctcccacgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaa |
121 |
Q |
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| T |
46187411 |
cccctcccacgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaa |
46187510 |
T |
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| Q |
122 |
tcatatgagcttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcgacat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46187511 |
tcatatgagcttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagaagaaagagaacaagttcgacat |
46187610 |
T |
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| Q |
222 |
ttaattctttgattggataaaattacatgcctctctcttttcatgttttcaatttaatttgg |
283 |
Q |
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| T |
46187611 |
ttaattctttgattggataaaatcacatgcctctctcttttcatgttttcaattcaatttgg |
46187672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 6381105 - 6381360
Alignment:
| Q |
18 |
acaacccctcccacgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatgggg |
117 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
6381105 |
acaacccatcccacgaagcaacactcattcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcatgctgagaaggttgatgggg |
6381204 |
T |
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| Q |
118 |
ttaatcatatgagcttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcg |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6381205 |
ttaatcatatgaacttggttatgggttcttttgttgataagcttacttttaatgacatgtttgttgttcttaaggataaagcggatagagaacaagttcg |
6381304 |
T |
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| Q |
218 |
acatttaattctttgattggataaaattacatgcctctctcttttcatgttttcaatt |
275 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6381305 |
acatttaattctttgattggataaaattacatg--tctctcttttcatgttttcaatt |
6381360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 29148424 - 29148677
Alignment:
| Q |
22 |
cccctcccacgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaa |
121 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29148424 |
cccctcccacgaagcaacaatcgttcctattctcagatggaaaacatgtgattggtgcaattaaggtttgtgctcttgctgagaaggttgatggggttaa |
29148523 |
T |
|
| Q |
122 |
tcatatgagcttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcgacat |
221 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
29148524 |
tcatatgaacttgattatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagcagatagagatcaagttcaacat |
29148623 |
T |
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| Q |
222 |
ttaattctttgattggataaaattacatgcctctctcttttcatgttttcaatt |
275 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
29148624 |
ttaattctttgattggataaaattacatgtctatctcttttcatgttttcaatt |
29148677 |
T |
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