View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1828_high_1 (Length: 369)
Name: NF1828_high_1
Description: NF1828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1828_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 36524268 - 36524608
Alignment:
| Q |
14 |
tggaggtttttatggtttatttgaaaaggatttcgttgaattgtgtttgatgtttgattacttgctatgcaagttctaaagatgctaattcattgtattt |
113 |
Q |
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| T |
36524268 |
tggaggtttttatggtttatttgaaaaggatttcgttgaattgtgtttgatgtttgattacttgctatgcaagttctaaagatgctaattcattgtattt |
36524367 |
T |
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| Q |
114 |
aaatacttatttgtttaaatttctcaatgaaattcatgatttattcttgacaaattttagtaacgccccatttaagtattttaatcttattatgttagta |
213 |
Q |
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| T |
36524368 |
aaatacttatttgtttaaatttctcaattaaattcatgatttattcttgaaattttttagtaacgccccatttaagtattataatcttattatgttagta |
36524467 |
T |
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| Q |
214 |
ttatgtaatctattgtccaagtatttctattttttaacatgatttcctatgtttatgcgttgttgtcgtgtttggtgtccgtgtttcatagaatagtgat |
313 |
Q |
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| T |
36524468 |
ttatgtaatctattgtccaagtatttttattttttaacatgatttcctatgtttatgcgtcgttgtcgtgtttggtgtccgtgtttcatagaatagtgat |
36524567 |
T |
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| Q |
314 |
gagttggcttagttttacctttcgttggtctgtgtcaatta |
354 |
Q |
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| T |
36524568 |
gagttagcttagttttacctttcgttggtctgtgtcaatta |
36524608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 36536137 - 36536210
Alignment:
| Q |
16 |
gaggttttt-atggtttatttgaaaaggatttcgttgaattgtgtttgatgtttgattacttgctatgcaagtt |
88 |
Q |
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| T |
36536137 |
gaggtttttgatcgtttatttcaaaaggacttgcttgaattgtgcttgatgtttgattacttgctatgcaagtt |
36536210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 36552064 - 36552094
Alignment:
| Q |
121 |
tatttgtttaaatttctcaatgaaattcatg |
151 |
Q |
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| T |
36552064 |
tatttgtttaaatttctcaatgaaattcatg |
36552094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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