View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_high_1 (Length: 695)

Name: NF18290_high_1
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_high_1
NF18290_high_1
[»] chr4 (1 HSPs)
chr4 (13-695)||(32667331-32668017)


Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 13 - 695
Target Start/End: Complemental strand, 32668017 - 32667331
Alignment:
Q  13 atactatcataataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagtttgac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32668017 atactatcataataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagtttgac 32667918  T
Q  113 taaaacccaattggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccacccca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667917 taaaacccaattggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccacccca 32667818  T
Q  213 attctcacgtttccttcaataaatacaatccacaagcacacaaatttgaaacttccatgttataatgcaaattagcctcttgtacatattctactcatat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  32667817 attctcacgtttccttcaataaatacaatccacaagcacacaaatttgaaacttccatgctacaatgcaaattagcctcttgtacattatctactcatat 32667718  T
Q  313 atttaacaatatattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaatnnnnnnnt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  32667717 atttaacaatatattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaataaaaaaat 32667618  T
Q  413 tatttacgatcgtgatcagagcgctaccacttgacatgtaactacaattg----aggttgtatcaatcatatttgaccgtgattttcttttgtgcgaaga 508  Q
    |||||| |||||||||||||||||| |||||||||||||||| |||||||    |||||||||||| |||||||||||||||||||||||||||||||||    
T  32667617 tatttatgatcgtgatcagagcgctgccacttgacatgtaaccacaattgaggtaggttgtatcaaccatatttgaccgtgattttcttttgtgcgaaga 32667518  T
Q  509 atcatgacacgaaaattatcatcaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaatggc 608  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667517 atcatgacacgaaaactatcataaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaatggc 32667418  T
Q  609 aagaggattgaaggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcatcatagcaggaatgggact 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667417 aagaggattgaaggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcatcatagcaggaatgggact 32667331  T

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