View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18290_high_10 (Length: 300)
Name: NF18290_high_10
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18290_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 52848618 - 52848885
Alignment:
| Q |
18 |
tcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52848618 |
tcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattaaaaggacgaacgaccat |
52848717 |
T |
|
| Q |
118 |
cttgtgaacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtag |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52848718 |
cttgtgaacctatcagagaaatctattgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtag |
52848817 |
T |
|
| Q |
218 |
ggaatgggcatagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaaagaccat |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52848818 |
ggaatgggcatagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaaagaccat |
52848885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 52847287 - 52847537
Alignment:
| Q |
28 |
gtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtgaacc |
127 |
Q |
| |
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|||||| |||||||| | | |||| |||||||||||||||| ||| |||||| |||||||||||||||||| ||||||| ||| |||||| ||| |||| |
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| T |
52847287 |
gtagatggtaaatcacccatggggagtggacatagtgatcaagatgctcctcagcaaaaaattgaggacattaaaaggaccaacaaccatcatgtaaacc |
52847386 |
T |
|
| Q |
128 |
tatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggca |
227 |
Q |
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| T |
52847387 |
acacagagaaatttaatgactcatttgaatctgaaacttgttgtatggctaccatatctcttcctcaggtagaatgtaaatcatctatatggaatgggca |
52847486 |
T |
|
| Q |
228 |
tagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaa |
278 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||||| ||||| |
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|
| T |
52847487 |
tagtgatcaagatgctcctcaggaaaaaattgaggacattaaaagaaccaa |
52847537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 273
Target Start/End: Original strand, 52848816 - 52849041
Alignment:
| Q |
48 |
agggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtgaacctatcagagaaatctatcgac |
147 |
Q |
| |
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||||||||| |||||||||||| ||| |||||||||||||| |||||| ||| ||||||| || ||||||||||| ||| | ||| ||||||| ||| |
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| T |
52848816 |
agggaatgggcatagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaaagaccatcttgttaacatctcaactaaatctaacgat |
52848915 |
T |
|
| Q |
148 |
tcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggcatagtgatcaagatgctcctc |
247 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||| || || | | |||||||||| |||||||||||||||||||||| |
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| T |
52848916 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
52849015 |
T |
|
| Q |
248 |
aacaaaaaactgaggatattaaaagg |
273 |
Q |
| |
|
| | |||| |||||| ||||||||| |
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|
| T |
52849016 |
agcgaaaagttgaggacattaaaagg |
52849041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 52847787 - 52848046
Alignment:
| Q |
24 |
tcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtg |
123 |
Q |
| |
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||||||||| ||||||||||||| | ||||||| |||||||||||||||| |||||| |||||||||||||| || ||| || ||| ||||||||||| |
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| T |
52847787 |
tcaggtagaatgtaaatcatctatatggaatgggcatagtgatcaatatgctcctcagaaaaaaattgaggacgttaaaattaccaaccaccatcttgtg |
52847886 |
T |
|
| Q |
124 |
aacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatg |
223 |
Q |
| |
|
|| ||||||||||||||| ||||||| |||||| ||| ||| ||||||| | ||| |||| |||| | ||||| | || |||| | |||| ||| |
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|
| T |
52847887 |
tacgtatcagagaaatctaatgactcatatgaatcagaatccttttgcatgacagccccgtctcatcctctggtagaatgtaaatcatctaaaggggatg |
52847986 |
T |
|
| Q |
224 |
ggcatagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaaagacc |
283 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| |||||| |||||||||||||| |||| |
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|
| T |
52847987 |
agcataatgatcaagatgatcctcaactaaaaattgaggacattaaaaggaccaatgacc |
52848046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 52847451 - 52847705
Alignment:
| Q |
24 |
tcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtg |
123 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||| || ||| |||||||| |
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| T |
52847451 |
tcaggtagaatgtaaatcatctatatggaatgggcatagtgatcaagatgctcctcaggaaaaaattgaggacattaaaagaaccaacatccatcttgca |
52847550 |
T |
|
| Q |
124 |
aacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatg |
223 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||| | ||||| |||||| |||| |||| |||| ||||| | || |||| | || ||||| |
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| T |
52847551 |
aaccatacagagaaatccaatgactcatttgaatcggaaacgtgttgtatggctcccatgtctcctcctcaggtagaacgtaaatcatctacagagaatg |
52847650 |
T |
|
| Q |
224 |
ggcatagtgatcaagatgctcctcaacaaaaaactgaggatattaaaaggaccaa |
278 |
Q |
| |
|
||||||||| | ||||||||||| | ||||||| |||||| |||||||||||||| |
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|
| T |
52847651 |
ggcatagtggtgaagatgctcctaagcaaaaaattgaggacattaaaaggaccaa |
52847705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 52847613 - 52847858
Alignment:
| Q |
18 |
tcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccat |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||| ||||||| | || ||| |||| | |||||||||||||||||| ||||||| ||| | ||| |
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|
| T |
52847613 |
tcctcctcaggtagaacgtaaatcatctacagagaatgggcatagtggtgaagatgctcctaagcaaaaaattgaggacattaaaaggaccaacaatcat |
52847712 |
T |
|
| Q |
118 |
cttgtgaacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtag |
217 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| |||| |||||||||| ||| || ||||| ||| ||||| | || |||| | || |
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|
| T |
52847713 |
attgtgaacctcaaagagaaatctattgattcatttgaatctaaaccatgttgcatggatgcaatgtctctccctcaggtagaatgtaaatcatctatat |
52847812 |
T |
|
| Q |
218 |
ggaatgggcatagtgatcaagatgctcctcaacaaaaaactgagga |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |||||| |
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| T |
52847813 |
ggaatgggcatagtgatcaatatgctcctcagaaaaaaattgagga |
52847858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 52848960 - 52849128
Alignment:
| Q |
24 |
tcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtg |
123 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||||||||||| ||| |||||| | |||| ||||||||||| ||||| | | |||||||||||| |
|
|
| T |
52848960 |
tcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtg |
52849059 |
T |
|
| Q |
124 |
aacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgccatatctcttcct |
192 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| || | |||| ||||||||||| |||| |||| |
|
|
| T |
52849060 |
aacctctcagagaaatctaatgactcatttgaatccaaatcgcgttgtatggctgccatttctcctcct |
52849128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 52848491 - 52848717
Alignment:
| Q |
59 |
atagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtgaacctatcagagaaatctatcgactcatttgaatc |
158 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||| ||| ||| ||| |
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|
| T |
52848491 |
atagtgatcaaaatgctcctcacaagaaaattgaggacatcgaaaggaccaacggccatcttgtgaacctcccagagaaatctaatgacccatcagaaca |
52848590 |
T |
|
| Q |
159 |
ggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggcatagtgatcaagatgctcctcaacaaaaaact |
258 |
Q |
| |
|
||| | |||| ||||| || | | |||| || | |||||| | || |||| | ||||||||| |||||||||||| ||| |||||||||||||| | |
|
|
| T |
52848591 |
tgaatcatgttccatggttgtcgtgtctcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaatt |
52848690 |
T |
|
| Q |
259 |
gaggatattaaaaggaccaaagaccat |
285 |
Q |
| |
|
||||| ||||||||||| || |||||| |
|
|
| T |
52848691 |
gaggacattaaaaggacgaacgaccat |
52848717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 52848322 - 52848451
Alignment:
| Q |
58 |
catagtgatcaatatgttcctcaacaaaaaattgaggacattgaaaggacgaacgaccatcttgtgaacctatcagagaaatctatcgactcatttgaat |
157 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| |||||||||| ||| |||||||||||||||||| | || | ||||||| ||||||||| ||| |
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|
| T |
52848322 |
catagtgatcaaaatgctcctcgtcaaaaaattgaagacattgaaatgaccaacgaccatcttgtgaacatcgcatataaatctaatgactcatttaaat |
52848421 |
T |
|
| Q |
158 |
cggaaccctgttgcatggctgccatatctc |
187 |
Q |
| |
|
||||||| |||||||| |||||| |||| |
|
|
| T |
52848422 |
atgaaccctattgcatggttgccatgtctc |
52848451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 52848178 - 52848283
Alignment:
| Q |
82 |
caaaaaattgaggacattgaaaggacgaacgaccatcttgtgaacctatcagagaaatctatcgactcatttgaatcggaaccctgttgcatggctgcca |
181 |
Q |
| |
|
||||||| |||||||||||||| || || |||| |||||||||||| ||||||||||| ||||| ||| ||| ||||| |||| ||||| ||||| |
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|
| T |
52848178 |
caaaaaaccgaggacattgaaagaaccaatgaccgtcttgtgaacctcaaagagaaatctaaagactcgtttcaatttgaaccatgtttcatggatgcca |
52848277 |
T |
|
| Q |
182 |
tatctc |
187 |
Q |
| |
|
| |||| |
|
|
| T |
52848278 |
tgtctc |
52848283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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