View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_high_2 (Length: 676)

Name: NF18290_high_2
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_high_2
NF18290_high_2
[»] chr1 (1 HSPs)
chr1 (64-658)||(39379526-39380119)
[»] chr4 (13 HSPs)
chr4 (362-658)||(3565059-3565355)
chr4 (131-339)||(3564787-3564992)
chr4 (131-316)||(3556769-3556954)
chr4 (166-321)||(3573456-3573610)
chr4 (363-607)||(3557042-3557286)
chr4 (153-316)||(1687154-1687317)
chr4 (530-658)||(1686744-1686872)
chr4 (362-440)||(3573296-3573374)
chr4 (366-440)||(1686950-1687024)
chr4 (197-317)||(3561795-3561915)
chr4 (539-611)||(3573134-3573206)
chr4 (539-594)||(11849195-11849250)
chr4 (542-575)||(3561512-3561545)
[»] chr7 (6 HSPs)
chr7 (539-594)||(29074553-29074608)
chr7 (539-594)||(29106288-29106343)
chr7 (542-584)||(29858913-29858955)
chr7 (540-594)||(29880752-29880806)
chr7 (542-583)||(12820674-12820715)
chr7 (549-594)||(29898858-29898903)
[»] scaffold0242 (2 HSPs)
scaffold0242 (196-296)||(14556-14656)
scaffold0242 (196-296)||(23391-23491)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 64 - 658
Target Start/End: Complemental strand, 39380119 - 39379526
Alignment:
Q  64 ctcatttcacaatttcaacggttcaatataacactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgg 163  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39380119 ctcatttcacactttcaacagttcaatatatcactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgc 39380020  T
Q  164 tgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 263  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39380019 tgtttttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 39379920  T
Q  264 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgtttatgag 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39379919 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgattac-ag 39379821  T
Q  364 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgttta 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39379820 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccagaaagattgttctcgttta 39379721  T
Q  464 gtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacc 563  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379720 gtcggttcctgtaatggattggtctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacc 39379621  T
Q  564 cagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaactttt 658  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39379620 cagccactaggaaaacatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactgaaactttt 39379526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 362 - 658
Target Start/End: Original strand, 3565059 - 3565355
Alignment:
Q  362 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgtt 461  Q
    |||||||||||||| |||||||||||| ||||||||||||| || |||||  |||||||||||||||||| | | ||||   ||||||| || ||| ||     
T  3565059 agtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcactctatgttgaatgaaaaagactgctctggta 3565158  T
Q  462 tagtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaa 561  Q
    |||  |||| ||| ||||| || ||||||||   |||| |||||| |  ||||||||| | |    |   |||||||||||||||| |||||||||||||    
T  3565159 tagctggtttctgcaatgggttgatctgtttgactggttatcgtttcatttatggttctgctgatactgaatgttatgagtactggctccgtttatggaa 3565258  T
Q  562 cccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaactttt 658  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||  |   | ||| |||||| ||| |||||||||||||||||| |||||||||    
T  3565259 cccagctactaggaaaatatctccaaaaattggttgttttcgtgatcttcatagtttcgtcttcaattgtggttgtgataattccaccggaactttt 3565355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 131 - 339
Target Start/End: Original strand, 3564787 - 3564992
Alignment:
Q  131 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 230  Q
    |||||||||| ||| ||||   ||| ||||||| |||||||||||| ||||| ||| ||  |||||| || ||||||||||||||||| || ||||| ||    
T  3564787 aacaatcagccatgtctactcgtccatcgccggcgttcttctccgatgatctcctcgccgtgatcctctcgttacttcctgtaaaatcacttcttcgttt 3564886  T
Q  231 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcaca 330  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||  ||| ||||| |||||||| ||||   ||| ||||||||    
T  3564887 caaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaatcaaaatcacaaaat---caatacttcaca 3564983  T
Q  331 ctcataact 339  Q
    || ||||||    
T  3564984 ctaataact 3564992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 131 - 316
Target Start/End: Original strand, 3556769 - 3556954
Alignment:
Q  131 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 230  Q
    |||||||||| ||| |||| | |||||||||||||||||||||||| ||||| |||  | ||||||||||||||||| |||| |||||||||||||||||    
T  3556769 aacaatcagccatgtctacgattccgtcgccggtgttcttctccgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctacttcgatt 3556868  T
Q  231 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 316  Q
     | ||| ||||| ||  |||||||  |||| ||||| |||||||||||||| ||||| ||  |||||| || |||||||| |||||    
T  3556869 tagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatctcaagagatcaaaatcacaaaatc 3556954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 3573610 - 3573456
Alignment:
Q  166 ttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcattt 265  Q
    |||||||| |||||||| ||||| | | ||||||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||    
T  3573610 ttcttctctgacgatctcctcacta-gttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt 3573512  T
Q  266 ccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa 321  Q
    |||||||||||||  | |||||  |  ||||||||| |||||||| ||||||||||    
T  3573511 ccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa 3573456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 363 - 607
Target Start/End: Original strand, 3557042 - 3557286
Alignment:
Q  363 gtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgttt 462  Q
    |||||||||||||||||||||| ||| ||||||||||||| || ||||||||| |  ||||||||| || ||||||||   ||||||| || ||| || |    
T  3557042 gtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattgaatgaaaaagactgctctggtat 3557141  T
Q  463 agtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaac 562  Q
    ||  |||||||| ||||| || || |||||   |||| |||||| |  |||| | |||| |   |    ||  ||||| |||||| | ||||||||||||    
T  3557142 agcaggttcctgcaatgggttgatttgtttgactggttatcgttccatttattggtccgatgatgatgaattatatgactactggctacgtttatggaac 3557241  T
Q  563 ccagccactaggaaaatatctcaaaaaattggttgtttttgtgat 607  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  3557242 ccagccactaggaaaatatctccaaaaattggttgttttcgtgat 3557286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 153 - 316
Target Start/End: Complemental strand, 1687317 - 1687154
Alignment:
Q  153 tccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttgg 252  Q
    ||||||||||||||||||||| || ||||| |||  | ||||||||||||||||| |||| |||||||| |||||||||| ||| ||||| ||  |||||    
T  1687317 tccgtcgccggtgttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttgg 1687218  T
Q  253 aaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 316  Q
    ||  |||| ||||| ||||||  |||||| ||||| ||  |||||| || |||||||| |||||    
T  1687217 aacgctctaatttctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc 1687154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 1686872 - 1686744
Alignment:
Q  530 tcatgttatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgatt 629  Q
    |||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| |||||     |  |||  ||||| |||    
T  1686872 tcatgttacgaataccggttccgtttatggaacccggccactaggaaaatatctcaaataattgggtcttttcgtgatgtaaacggtttcatcttcaatt 1686773  T
Q  630 ttggttgtgataattccactggaactttt 658  Q
    |||||||||||||||||||||| ||||||    
T  1686772 ttggttgtgataattccactggcactttt 1686744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 3573374 - 3573296
Alignment:
Q  362 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 440  Q
    |||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||    
T  3573374 agtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga 3573296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 1687024 - 1686950
Alignment:
Q  366 tcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 440  Q
    |||||||||| |||||| || || ||||||||||||  ||| |||||||||||||||||||||||| ||||||||    
T  1687024 tcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattga 1686950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 3561915 - 3561795
Alignment:
Q  197 tttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaa 296  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||| ||   |||||| ||||||||||| |||||    || || ||||| ||| ||||    
T  3561915 tttcgttacttcccataaaatctctaattcgattcaaatgtgtaagtaaatattggaacactctcatttcggatccttccttcgtgaaattacacctcaa 3561816  T
Q  297 gaaattaaaatcacgaaatcc 317  Q
    ||||| || | ||||||||||    
T  3561815 gaaatcaacaacacgaaatcc 3561795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 611
Target Start/End: Complemental strand, 3573206 - 3573134
Alignment:
Q  539 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctg 611  Q
    ||||||||| |||| || |||||||| |||||  ||||||||||||||||||| || | |||| |||||||||    
T  3573206 gagtactggctccgattctggaaccctgccacccggaaaatatctcaaaaaatggggtattttcgtgattctg 3573134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 594
Target Start/End: Complemental strand, 11849250 - 11849195
Alignment:
Q  539 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 594  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  11849250 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 11849195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 575
Target Start/End: Complemental strand, 3561545 - 3561512
Alignment:
Q  542 tactggttccgtttatggaacccagccactagga 575  Q
    |||||| |||||||||||||||||||||||||||    
T  3561545 tactggctccgtttatggaacccagccactagga 3561512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 29074553 - 29074608
Alignment:
Q  539 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 594  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29074553 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29074608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 29106288 - 29106343
Alignment:
Q  539 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 594  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29106288 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 584
Target Start/End: Original strand, 29858913 - 29858955
Alignment:
Q  542 tactggttccgtttatggaacccagccactaggaaaatatctc 584  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  29858913 tactggttccgtttatggaacccagccacaaggacaacatctc 29858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 29880752 - 29880806
Alignment:
Q  540 agtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 594  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||||| ||| ||||    
T  29880752 agtactgcttctgtttatggaacccatccactaagaaaatatctcataaatttgg 29880806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 583
Target Start/End: Complemental strand, 12820715 - 12820674
Alignment:
Q  542 tactggttccgtttatggaacccagccactaggaaaatatct 583  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  12820715 tactggttccatatctggaacccagccactaggaaaatatct 12820674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 29898858 - 29898903
Alignment:
Q  549 tccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 594  Q
    |||||||||||||||||||||| |||| || |||||||||| ||||    
T  29898858 tccgtttatggaacccagccaccaggacaacatctcaaaaatttgg 29898903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 14656 - 14556
Alignment:
Q  196 ctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttca 295  Q
    ||||| || ||||| || ||||||||  |||||||||||||||| | |||  |||||||||| || || || ||||||| |||||| ||||| ||| |||    
T  14656 ctttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacacctca 14557  T
Q  296 a 296  Q
    |    
T  14556 a 14556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 23491 - 23391
Alignment:
Q  196 ctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttca 295  Q
    ||||| || ||||| || ||||||||  |||||||||||||||| | |||  |||||||||| || || || ||||||| |||||| ||||| ||| |||    
T  23491 ctttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacacctca 23392  T
Q  296 a 296  Q
    |    
T  23391 a 23391  T

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